Wall clock time and date at job start Sun Mar 29 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47043 * 14.52430 * 3 2 1 5 5 C 1.34778 * 120.00155 * 270.00289 * 4 3 2 6 6 O 1.21286 * 119.99745 * 185.94493 * 5 4 3 7 7 C 1.50688 * 120.00065 * 5.94271 * 5 4 3 8 8 S 1.81008 * 109.47175 * 182.63236 * 7 5 4 9 9 C 1.76201 * 99.99794 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00135 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00042 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47174 * 59.99399 * 13 11 9 15 15 H 1.48500 * 109.47181 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46790 * 300.00061 * 13 11 9 17 17 C 1.46508 * 119.99926 * 90.00277 * 4 3 2 18 18 C 1.52999 * 117.49824 * 196.39178 * 17 4 3 19 19 C 1.53000 * 117.50004 * 127.72880 * 17 4 3 20 20 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 21 21 H 1.08999 * 109.46979 * 254.53146 * 3 2 1 22 22 H 1.08997 * 109.47058 * 134.52807 * 3 2 1 23 23 H 1.09002 * 109.47185 * 302.63026 * 7 5 4 24 24 H 1.08997 * 109.47627 * 62.63464 * 7 5 4 25 25 H 0.96993 * 119.99846 * 180.02562 * 12 11 9 26 26 H 1.09000 * 115.54615 * 342.06005 * 17 4 3 27 27 H 1.08999 * 117.49985 * 359.97438 * 18 17 4 28 28 H 1.09002 * 117.49484 * 145.01926 * 18 17 4 29 29 H 1.08999 * 117.49683 * 214.98122 * 19 17 4 30 30 H 1.08999 * 117.49877 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3362 -0.3464 5 6 3.3599 -2.2439 0.6241 6 8 3.8656 -3.3117 0.3503 7 6 2.9833 -1.9320 2.0495 8 16 3.4782 -3.3060 3.1188 9 6 2.9333 -2.6919 4.6779 10 1 2.4560 -1.7251 4.7406 11 6 3.1185 -3.4503 5.8256 12 7 3.7007 -4.6284 5.7492 13 14 2.5402 -2.7997 7.4784 14 1 1.0740 -2.5684 7.4338 15 1 2.8524 -3.7923 8.5378 16 1 3.2341 -1.5212 7.7773 17 6 3.3793 -1.6864 -1.7478 18 6 3.5125 -3.1712 -2.0921 19 6 4.7491 -2.2689 -2.1020 20 1 -1.0498 -0.0003 -0.0003 21 1 3.0092 0.2749 0.9904 22 1 3.0090 0.7215 -0.7326 23 1 3.4912 -1.0220 2.3687 24 1 1.9048 -1.7891 2.1174 25 1 3.8298 -5.1584 6.5512 26 1 2.9017 -1.0399 -2.4841 27 1 3.4187 -3.8875 -1.2758 28 1 3.1228 -3.5015 -3.0550 29 1 5.1724 -2.0060 -3.0714 30 1 5.4685 -2.3912 -1.2924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274010697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:19 Heat of formation + Delta-G solvation = 40.330771 kcal Electronic energy + Delta-G solvation = -14410.112491 eV Core-core repulsion = 11913.152699 eV Total energy + Delta-G solvation = -2496.959792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.40949 -37.54382 -36.28658 -34.60470 -33.27420 -30.65510 -27.90120 -27.66895 -23.95252 -23.27368 -20.77667 -19.87070 -18.99623 -17.94622 -17.52372 -16.89591 -16.64876 -15.98658 -15.45119 -15.02994 -14.76676 -14.54340 -14.25019 -14.04049 -13.72149 -13.19138 -12.88706 -12.65274 -12.44901 -12.07872 -11.76162 -11.60129 -11.28649 -11.15715 -11.09220 -10.51359 -10.31276 -9.59564 -8.69627 -8.36366 -6.15097 1.15304 1.36655 1.42405 1.43700 1.51227 1.68010 1.88368 2.25709 2.33519 2.96247 2.97792 3.22971 3.49425 3.61304 3.97921 4.07624 4.10908 4.16884 4.28863 4.43479 4.59421 4.68702 4.84871 5.06115 5.08747 5.38935 5.39298 5.70222 6.16370 6.18598 6.66687 7.04604 7.08456 8.72753 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.006457 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.223507 B = 4335.325062 C = 5043.341493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.242 4.242 3 C 0.217 3.783 4 N -0.580 5.580 5 C 0.532 3.468 6 O -0.541 6.541 7 C -0.125 4.125 8 S -0.145 6.145 9 C -0.548 4.548 10 H 0.081 0.919 11 C 0.015 3.985 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.261 1.261 17 C 0.075 3.925 18 C -0.210 4.210 19 C -0.177 4.177 20 H 0.242 0.758 21 H 0.109 0.891 22 H 0.143 0.857 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.272 0.728 26 H 0.166 0.834 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 12.563 -13.928 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.243 4.243 3 C 0.096 3.904 4 N -0.311 5.311 5 C 0.321 3.679 6 O -0.418 6.418 7 C -0.276 4.276 8 S 0.082 5.918 9 C -0.696 4.696 10 H 0.099 0.901 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.820 3.180 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.185 1.185 17 C -0.028 4.028 18 C -0.247 4.247 19 C -0.216 4.216 20 H 0.259 0.741 21 H 0.127 0.873 22 H 0.161 0.839 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.183 0.817 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.193 10.873 -14.243 18.201 hybrid contribution -1.026 0.993 1.445 2.032 sum -4.219 11.866 -12.797 17.955 Atomic orbital electron populations 1.25758 0.96953 0.97246 0.99697 1.23954 0.95722 1.02819 1.01780 1.18764 0.83463 0.83271 1.04908 1.47368 1.65044 1.13382 1.05338 1.20175 0.77393 0.83601 0.86760 1.90574 1.43237 1.25561 1.82464 1.23413 1.04947 1.04403 0.94880 1.85497 1.79438 1.24945 1.01891 1.23153 1.45858 1.07481 0.93126 0.90120 1.26129 0.94569 0.94708 1.03594 1.70172 1.41394 1.12135 1.31042 0.85010 0.79060 0.78293 0.75682 1.18757 1.20226 1.18505 1.22040 1.00945 0.97574 0.82266 1.23715 1.02760 0.94532 1.03734 1.23248 0.91175 1.03993 1.03179 0.74126 0.87308 0.83944 0.87322 0.88576 0.91907 0.81662 0.88620 0.86901 0.85409 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 19.25 74.32 1.43 -2.22 16 2 C -0.24 -5.44 13.50 31.13 0.42 -5.02 16 3 C 0.22 4.39 5.69 84.58 0.48 4.87 16 4 N -0.58 -16.09 2.80 -808.30 -2.26 -18.35 16 5 C 0.53 20.50 7.47 87.65 0.66 21.16 16 6 O -0.54 -24.81 11.61 -3.05 -0.04 -24.85 16 7 C -0.13 -5.21 4.91 71.23 0.35 -4.86 16 8 S -0.14 -8.17 20.58 -56.49 -1.16 -9.33 16 9 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 10 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.85 5.49 84.86 0.47 1.32 16 12 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 13 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 14 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 C 0.08 1.75 6.60 44.99 0.30 2.05 16 18 C -0.21 -5.82 9.63 30.62 0.29 -5.53 16 19 C -0.18 -4.35 9.88 30.62 0.30 -4.05 16 20 H 0.24 3.22 7.80 -4.43 -0.03 3.18 16 21 H 0.11 2.16 6.42 -2.39 -0.02 2.14 16 22 H 0.14 1.75 8.07 -2.39 -0.02 1.73 16 23 H 0.11 4.02 7.09 -2.39 -0.02 4.01 16 24 H 0.10 3.87 7.99 -2.40 -0.02 3.85 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.10 3.62 5.22 -5.35 -0.03 3.59 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.12 7.60 -2.39 -0.02 2.11 16 Total: -1.00 -75.99 281.75 5.32 -70.68 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.12 Total: 15.46 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.34 Total: -23.36 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.98 Total: -74.40 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.85 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -75.99 5.32 -70.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274010697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.010 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds