Wall clock time and date at job start Sun Mar 29 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33391 * 125.20248 * 2 1 4 4 C 1.38424 * 114.92283 * 180.02562 * 3 2 1 5 5 C 1.33385 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20617 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47293 * 89.99530 * 6 5 4 8 8 C 1.46499 * 120.00136 * 270.00491 * 7 6 5 9 9 C 1.34784 * 119.99893 * 90.00297 * 7 6 5 10 10 O 1.21682 * 119.99954 * 359.97438 * 9 7 6 11 11 C 1.46368 * 119.99916 * 179.72943 * 9 7 6 12 12 H 1.07998 * 120.00437 * 359.97438 * 11 9 7 13 13 C 1.40055 * 119.99853 * 179.97438 * 11 9 7 14 14 N 1.30662 * 119.99894 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99877 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47200 * 59.99901 * 15 13 11 17 17 H 1.48497 * 109.47049 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47156 * 299.99916 * 15 13 11 19 19 S 1.75886 * 125.20452 * 180.31849 * 2 1 3 20 20 H 1.09007 * 109.46895 * 90.00284 * 1 2 3 21 21 H 1.09004 * 109.47067 * 209.99913 * 1 2 3 22 22 H 1.08994 * 109.47324 * 330.00282 * 1 2 3 23 23 H 1.07998 * 122.53854 * 0.02562 * 3 2 1 24 24 H 1.08003 * 122.54205 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46951 * 329.99845 * 6 5 4 26 26 H 1.08998 * 109.47681 * 209.99898 * 6 5 4 27 27 H 1.08999 * 109.47256 * 269.99572 * 8 7 6 28 28 H 1.08998 * 109.47416 * 29.99674 * 8 7 6 29 29 H 1.09008 * 109.47058 * 150.00274 * 8 7 6 30 30 H 0.97000 * 120.00244 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 7 5.8443 -1.1492 1.3779 8 6 6.5190 -0.0474 2.0686 9 6 5.6452 -2.3214 2.0128 10 8 5.0843 -3.2363 1.4392 11 6 6.1083 -2.4954 3.3903 12 1 6.6100 -1.6849 3.8979 13 6 5.9009 -3.7133 4.0502 14 7 5.2934 -4.6938 3.4362 15 14 6.4926 -3.9357 5.8080 16 1 5.8302 -2.9358 6.6836 17 1 6.1545 -5.3043 6.2746 18 1 7.9641 -3.7440 5.8629 19 16 2.5209 -1.4371 -0.0080 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.8668 2.0895 0.0004 24 1 4.3721 1.6351 -0.0002 25 1 6.0384 -0.2710 -0.5168 26 1 5.4133 -1.9375 -0.5172 27 1 7.5933 -0.1143 1.8965 28 1 6.1482 0.9031 1.6853 29 1 6.3177 -0.1115 3.1380 30 1 5.1501 -5.5374 3.8931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274839680.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:46 Heat of formation + Delta-G solvation = -5.973024 kcal Electronic energy + Delta-G solvation = -14723.826058 eV Core-core repulsion = 12224.858383 eV Total energy + Delta-G solvation = -2498.967675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.10635 -37.07944 -34.03620 -32.43421 -31.75394 -28.68556 -26.11589 -25.46025 -23.53623 -22.28502 -19.46562 -18.24069 -16.50798 -16.27658 -15.54906 -14.89602 -14.59987 -14.11106 -13.64785 -13.57964 -12.88249 -12.58418 -12.20690 -12.07360 -11.72681 -11.53491 -11.40359 -11.27661 -11.13981 -10.90921 -10.77265 -10.27152 -10.14339 -10.02552 -8.84583 -8.13257 -7.90246 -7.53350 -7.27368 -6.18669 -4.64210 1.46767 2.16975 2.62602 3.14106 3.15690 3.20663 3.22492 4.10472 4.55781 4.70340 5.16227 5.38061 5.46729 5.64393 5.72291 5.76434 5.85792 5.96428 6.04084 6.11670 6.23939 6.47368 6.55407 6.60930 6.74329 6.98592 7.44712 7.58419 8.11586 8.32924 9.02378 9.40276 10.57199 10.75824 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.007180 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.130078 B = 3898.635613 C = 4237.226735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.214 4.214 3 C -0.142 4.142 4 C -0.151 4.151 5 C -0.169 4.169 6 C 0.190 3.810 7 N -0.642 5.642 8 C 0.103 3.897 9 C 0.555 3.445 10 O -0.571 6.571 11 C -0.542 4.542 12 H 0.071 0.929 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 S 0.149 5.851 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 9.836 -4.729 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.332 4.332 3 C -0.173 4.173 4 C -0.182 4.182 5 C -0.289 4.289 6 C 0.064 3.936 7 N -0.380 5.380 8 C -0.042 4.042 9 C 0.361 3.639 10 O -0.453 6.453 11 C -0.579 4.579 12 H 0.089 0.911 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.730 3.270 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.193 1.193 19 S 0.414 5.586 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.145 0.855 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.737 7.545 -5.039 10.235 hybrid contribution 0.640 1.638 1.041 2.043 sum -4.097 9.183 -3.999 10.821 Atomic orbital electron populations 1.20232 0.88608 1.02632 1.01991 1.24632 0.99866 0.97493 1.11172 1.19897 0.93032 0.98534 1.05820 1.19916 0.95841 0.95689 1.06762 1.25314 1.00386 0.96345 1.06846 1.19475 0.86768 1.00508 0.86856 1.48106 1.62778 1.15081 1.12058 1.21392 0.95394 0.88828 0.98547 1.18281 0.79208 0.79319 0.87065 1.90592 1.46608 1.40148 1.67925 1.20956 1.40485 0.99537 0.96924 0.91084 1.25718 0.93208 0.95318 0.98937 1.70001 1.30364 1.02686 1.36369 0.86467 0.79808 0.77869 0.82830 1.19300 1.20542 1.19262 1.84824 0.95722 1.07253 1.70759 0.91390 0.91602 0.91245 0.85477 0.85225 0.90913 0.89921 0.94905 0.94072 0.91020 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.38 36.00 0.37 -0.56 16 2 C -0.21 -3.43 6.51 -36.00 -0.23 -3.66 16 3 C -0.14 -2.19 10.05 -41.21 -0.41 -2.61 16 4 C -0.15 -2.50 10.05 -41.21 -0.41 -2.92 16 5 C -0.17 -3.23 6.09 -36.01 -0.22 -3.45 16 6 C 0.19 3.80 5.90 -5.20 -0.03 3.77 16 7 N -0.64 -14.76 2.86 -184.64 -0.53 -15.28 16 8 C 0.10 1.93 10.14 59.85 0.61 2.54 16 9 C 0.56 15.74 7.61 -12.99 -0.10 15.64 16 10 O -0.57 -17.99 14.60 5.20 0.08 -17.91 16 11 C -0.54 -15.27 8.74 -35.63 -0.31 -15.58 16 12 H 0.07 1.83 6.00 -52.49 -0.32 1.52 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 14 N -0.77 -22.86 11.83 55.55 0.66 -22.20 16 15 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 S 0.15 2.90 23.31 -107.50 -2.51 0.40 16 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 24 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 25 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.08 1.81 7.42 -51.93 -0.39 1.42 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.07 1.41 6.10 -51.92 -0.32 1.09 16 30 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 277.09 15.07 4.18 4.18 Total: -1.00 -33.39 277.09 -7.51 -40.91 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.53 Total: -0.76 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.84 Total: -4.47 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.13 Total: -37.48 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.08 Total: -17.91 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.51 Total: 0.40 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.39 -7.51 -40.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274839680.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.933 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds