Wall clock time and date at job start Sun Mar 29 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33391 * 125.20248 * 2 1 4 4 C 1.38424 * 114.92283 * 180.02562 * 3 2 1 5 5 C 1.33385 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20617 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47293 * 89.99530 * 6 5 4 8 8 C 1.46499 * 120.00136 * 270.00491 * 7 6 5 9 9 C 1.34784 * 119.99893 * 90.00297 * 7 6 5 10 10 O 1.21682 * 119.99954 * 359.97438 * 9 7 6 11 11 C 1.46368 * 119.99916 * 179.72943 * 9 7 6 12 12 H 1.07998 * 120.00437 * 359.97438 * 11 9 7 13 13 C 1.40055 * 119.99853 * 179.97438 * 11 9 7 14 14 N 1.30662 * 119.99894 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99877 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47200 * 59.99901 * 15 13 11 17 17 H 1.48497 * 109.47049 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47156 * 299.99916 * 15 13 11 19 19 S 1.75886 * 125.20452 * 180.31849 * 2 1 3 20 20 H 1.09007 * 109.46895 * 90.00284 * 1 2 3 21 21 H 1.09004 * 109.47067 * 209.99913 * 1 2 3 22 22 H 1.08994 * 109.47324 * 330.00282 * 1 2 3 23 23 H 1.07998 * 122.53854 * 0.02562 * 3 2 1 24 24 H 1.08003 * 122.54205 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46951 * 329.99845 * 6 5 4 26 26 H 1.08998 * 109.47681 * 209.99898 * 6 5 4 27 27 H 1.08999 * 109.47256 * 269.99572 * 8 7 6 28 28 H 1.08998 * 109.47416 * 29.99674 * 8 7 6 29 29 H 1.09008 * 109.47058 * 150.00274 * 8 7 6 30 30 H 0.97000 * 120.00244 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 7 5.8443 -1.1492 1.3779 8 6 6.5190 -0.0474 2.0686 9 6 5.6452 -2.3214 2.0128 10 8 5.0843 -3.2363 1.4392 11 6 6.1083 -2.4954 3.3903 12 1 6.6100 -1.6849 3.8979 13 6 5.9009 -3.7133 4.0502 14 7 5.2934 -4.6938 3.4362 15 14 6.4926 -3.9357 5.8080 16 1 5.8302 -2.9358 6.6836 17 1 6.1545 -5.3043 6.2746 18 1 7.9641 -3.7440 5.8629 19 16 2.5209 -1.4371 -0.0080 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.8668 2.0895 0.0004 24 1 4.3721 1.6351 -0.0002 25 1 6.0384 -0.2710 -0.5168 26 1 5.4133 -1.9375 -0.5172 27 1 7.5933 -0.1143 1.8965 28 1 6.1482 0.9031 1.6853 29 1 6.3177 -0.1115 3.1380 30 1 5.1501 -5.5374 3.8931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274839680.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:46 Heat of formation + Delta-G solvation = -27.542193 kcal Electronic energy + Delta-G solvation = -14724.761367 eV Core-core repulsion = 12224.858383 eV Total energy + Delta-G solvation = -2499.902984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83584 -38.60797 -35.89320 -34.56582 -33.08333 -30.14868 -28.08707 -26.97563 -25.06697 -23.65336 -21.31904 -19.62903 -18.34582 -17.83391 -17.53644 -16.39069 -16.27407 -15.89954 -15.18431 -14.71468 -14.34191 -14.00924 -13.74500 -13.48527 -13.33447 -13.19891 -13.06052 -12.74824 -12.71282 -12.56509 -12.35197 -12.06070 -11.98006 -11.40745 -10.90483 -9.84206 -9.36588 -9.33088 -9.08159 -8.25964 -6.81932 0.13493 0.80504 1.29101 1.38770 1.42194 1.53215 1.87460 2.25061 2.49046 3.00857 3.62528 4.02266 4.09360 4.23791 4.45298 4.56569 4.59428 4.73245 4.76344 4.84952 4.95915 5.04009 5.09726 5.31230 5.37745 5.40975 5.70516 5.81011 6.14540 6.38576 6.89649 7.42723 8.50090 8.69684 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.007180 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.130078 B = 3898.635613 C = 4237.226735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.194 4.194 3 C -0.146 4.146 4 C -0.129 4.129 5 C -0.195 4.195 6 C 0.192 3.808 7 N -0.646 5.646 8 C 0.100 3.900 9 C 0.538 3.462 10 O -0.618 6.618 11 C -0.570 4.570 12 H 0.090 0.910 13 C 0.030 3.970 14 N -0.820 5.820 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.276 1.276 18 H -0.253 1.253 19 S 0.045 5.955 20 H 0.088 0.912 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.168 0.832 24 H 0.163 0.837 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 13.013 -3.766 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.312 4.312 3 C -0.176 4.176 4 C -0.160 4.160 5 C -0.314 4.314 6 C 0.067 3.933 7 N -0.382 5.382 8 C -0.043 4.043 9 C 0.344 3.656 10 O -0.504 6.504 11 C -0.607 4.607 12 H 0.108 0.892 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.811 3.189 16 H -0.180 1.180 17 H -0.201 1.201 18 H -0.177 1.177 19 S 0.309 5.691 20 H 0.106 0.894 21 H 0.079 0.921 22 H 0.114 0.886 23 H 0.185 0.815 24 H 0.180 0.820 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.586 10.789 -4.096 12.418 hybrid contribution 0.548 0.785 0.635 1.149 sum -4.038 11.574 -3.461 12.737 Atomic orbital electron populations 1.20394 0.85936 1.03640 1.03625 1.25041 1.01305 0.95194 1.09643 1.20333 0.92460 0.99986 1.04776 1.20346 0.97250 0.95048 1.03327 1.25116 0.98920 0.96930 1.10479 1.19536 0.88564 0.99972 0.85214 1.47964 1.62384 1.14689 1.13167 1.21568 0.96143 0.88867 0.97682 1.18635 0.78884 0.80416 0.87669 1.90551 1.48434 1.42367 1.69031 1.21496 1.40971 1.00659 0.97543 0.89182 1.26944 0.92702 0.94548 1.04329 1.70186 1.32218 1.03556 1.39027 0.85158 0.79790 0.78098 0.75808 1.17985 1.20056 1.17702 1.85192 0.99132 1.11663 1.73094 0.89373 0.92123 0.88576 0.81482 0.81996 0.86860 0.93409 0.93293 0.90390 0.92200 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.38 71.23 0.74 -0.97 16 2 C -0.19 -5.89 6.51 24.59 0.16 -5.73 16 3 C -0.15 -3.97 10.05 21.22 0.21 -3.76 16 4 C -0.13 -3.85 10.05 21.22 0.21 -3.64 16 5 C -0.20 -7.40 6.09 24.59 0.15 -7.25 16 6 C 0.19 7.72 5.90 85.63 0.50 8.22 16 7 N -0.65 -29.69 2.86 -856.28 -2.45 -32.14 16 8 C 0.10 3.55 10.14 127.77 1.30 4.84 16 9 C 0.54 31.54 7.61 86.36 0.66 32.20 16 10 O -0.62 -41.24 14.60 -4.29 -0.06 -41.31 16 11 C -0.57 -32.59 8.74 24.83 0.22 -32.38 16 12 H 0.09 4.61 6.00 -2.91 -0.02 4.59 16 13 C 0.03 1.69 5.50 85.31 0.47 2.15 16 14 N -0.82 -50.93 11.83 21.84 0.26 -50.67 16 15 Si 0.99 41.52 29.56 68.60 2.03 43.55 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 19 S 0.05 1.83 23.31 -56.49 -1.32 0.51 16 20 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 24 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 25 H 0.11 3.50 8.07 -2.39 -0.02 3.48 16 26 H 0.05 2.22 7.42 -2.39 -0.02 2.20 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 29 H 0.06 2.25 6.10 -2.38 -0.01 2.24 16 30 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 Total: -1.00 -77.19 277.09 4.22 -72.97 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.14 Total: 13.40 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.62 Total: -6.31 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.19 Total: -82.81 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.06 Total: -41.31 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -77.19 4.22 -72.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274839680.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.425 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds