Wall clock time and date at job start Sun Mar 29 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46782 * 2 1 4 4 C 1.38142 * 120.35171 * 125.02198 * 3 2 1 5 5 C 1.39664 * 118.50201 * 179.97438 * 4 3 2 6 6 N 1.38535 * 120.48423 * 179.97438 * 5 4 3 7 7 N 1.32911 * 119.03053 * 359.73335 * 5 4 3 8 8 C 1.32503 * 120.61017 * 0.53822 * 7 5 4 9 9 S 1.76196 * 119.18590 * 179.72402 * 8 7 5 10 10 C 1.81003 * 99.99843 * 359.73282 * 9 8 7 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72035 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 N 1.32469 * 120.35161 * 304.99645 * 3 2 1 20 20 H 1.09004 * 109.46531 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47429 * 300.00013 * 1 2 3 22 22 H 1.09000 * 109.47240 * 60.00547 * 1 2 3 23 23 H 1.08996 * 109.47429 * 239.99987 * 2 1 3 24 24 H 1.09000 * 109.47240 * 119.99453 * 2 1 3 25 25 H 1.08000 * 120.75240 * 359.95055 * 4 3 2 26 26 H 0.97006 * 119.99722 * 0.02562 * 6 5 4 27 27 H 0.96996 * 120.00075 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47363 * 60.00062 * 10 9 8 29 29 H 1.09001 * 109.47208 * 299.99509 * 10 9 8 30 30 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9099 1.8510 0.9762 5 6 3.3512 3.1756 0.9390 6 7 4.2311 3.6504 1.8979 7 7 2.9184 3.9725 -0.0326 8 6 2.0722 3.5226 -0.9477 9 16 1.5170 4.6136 -2.2149 10 6 2.4016 6.1204 -1.7422 11 6 2.0695 7.2235 -2.7138 12 1 1.3964 7.0339 -3.5367 13 6 2.6293 8.4735 -2.5549 14 7 3.4533 8.7030 -1.5560 15 14 2.2171 9.8411 -3.7588 16 1 1.2738 9.3296 -4.7851 17 1 1.5892 10.9712 -3.0281 18 1 3.4613 10.3098 -4.4204 19 7 1.6372 2.2705 -0.9364 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.2470 1.1783 1.7510 26 1 4.5456 3.0615 2.6017 27 1 4.5333 4.5715 1.8651 28 1 3.4751 5.9319 -1.7590 29 1 2.1007 6.4185 -0.7379 30 1 3.8474 9.5823 -1.4446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279136072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:18 Heat of formation + Delta-G solvation = 25.617728 kcal Electronic energy + Delta-G solvation = -14213.026991 eV Core-core repulsion = 11747.721945 eV Total energy + Delta-G solvation = -2465.305046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38435 -35.65417 -34.14307 -33.14979 -30.99933 -29.81116 -28.50463 -24.51512 -24.27080 -22.80896 -21.27317 -17.95169 -17.73510 -16.26782 -15.48947 -15.32788 -15.00933 -14.81341 -14.64890 -13.97038 -13.79842 -12.94469 -12.40480 -12.35273 -12.25429 -11.49468 -11.45653 -11.09172 -10.90406 -10.88489 -10.59708 -9.95540 -9.63903 -9.58164 -9.16286 -8.72083 -8.61112 -8.26823 -6.84516 -6.17851 -4.23949 1.35465 1.78434 2.21031 3.25757 3.32833 3.35244 3.44066 3.82151 4.19279 4.35725 4.49902 4.94402 5.19158 5.26431 5.28049 5.34859 5.44499 5.64932 5.80535 5.88979 6.11117 6.31516 6.54589 7.12141 7.19947 7.31025 7.41400 7.73318 7.89278 7.99639 8.61877 8.77933 9.39098 10.92900 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.005870 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.418441 B = 4768.800012 C = 5452.775416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.210 3.790 4 C -0.320 4.320 5 C 0.450 3.550 6 N -0.840 5.840 7 N -0.574 5.574 8 C 0.351 3.649 9 S -0.040 6.040 10 C 0.071 3.929 11 C -0.522 4.522 12 H 0.067 0.933 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.547 5.547 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.132 0.868 26 H 0.406 0.594 27 H 0.409 0.591 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 -13.902 6.844 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C 0.062 3.938 4 C -0.353 4.353 5 C 0.200 3.800 6 N -0.384 5.384 7 N -0.303 5.303 8 C -0.024 4.024 9 S 0.199 5.801 10 C -0.077 4.077 11 C -0.562 4.562 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.270 5.270 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.150 0.850 26 H 0.236 0.764 27 H 0.239 0.761 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.368 -13.283 5.198 14.330 hybrid contribution 1.456 0.593 1.641 2.272 sum 0.087 -12.690 6.839 14.416 Atomic orbital electron populations 1.21653 0.93926 1.01424 1.03046 1.20455 0.97156 0.90127 1.02938 1.21300 0.88948 0.95541 0.87961 1.21661 1.10222 0.96637 1.06756 1.18541 0.86033 0.88654 0.86743 1.42131 1.49881 1.16545 1.29832 1.68524 1.18255 1.37389 1.06137 1.25205 0.89546 0.92580 0.95065 1.85769 1.58744 1.06942 1.28682 1.21293 0.97793 0.88067 1.00562 1.20735 1.29308 0.94196 1.11997 0.91441 1.24933 0.94547 0.98293 0.95759 1.69989 1.29779 1.22809 1.29756 0.86313 0.78381 0.81277 0.80778 1.19351 1.20710 1.20721 1.68398 1.29160 1.02690 1.26708 0.92480 0.92990 0.91161 0.89766 0.90479 0.85021 0.76386 0.76121 0.93162 0.93167 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.78 37.16 0.36 -1.21 16 2 C -0.07 -0.78 6.36 -27.88 -0.18 -0.96 16 3 C 0.21 3.33 6.20 -82.35 -0.51 2.82 16 4 C -0.32 -4.73 9.65 -39.08 -0.38 -5.11 16 5 C 0.45 7.67 7.82 -154.84 -1.21 6.46 16 6 N -0.84 -10.68 9.06 31.23 0.28 -10.40 16 7 N -0.57 -12.23 9.17 -12.68 -0.12 -12.35 16 8 C 0.35 7.67 7.85 -90.88 -0.71 6.96 16 9 S -0.04 -0.92 22.17 -107.50 -2.38 -3.30 16 10 C 0.07 1.89 4.56 36.01 0.16 2.06 16 11 C -0.52 -14.72 9.13 -34.44 -0.31 -15.04 16 12 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 13 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 14 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 15 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 N -0.55 -10.69 9.99 -9.76 -0.10 -10.79 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 25 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 26 H 0.41 3.54 8.84 -40.82 -0.36 3.18 16 27 H 0.41 5.34 8.95 -40.82 -0.37 4.97 16 28 H 0.05 1.43 8.11 -51.92 -0.42 1.01 16 29 H 0.05 1.43 8.11 -51.92 -0.42 1.01 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 279.70 15.07 4.21 4.21 Total: -1.00 -31.80 279.70 -8.88 -40.68 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.62 Total: 2.99 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.87 Total: -2.17 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.81 Total: -58.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.38 Total: -3.30 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.80 -8.88 -40.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279136072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.294 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds