Wall clock time and date at job start Sun Mar 29 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46782 * 2 1 4 4 C 1.38142 * 120.35171 * 125.02198 * 3 2 1 5 5 C 1.39664 * 118.50201 * 179.97438 * 4 3 2 6 6 N 1.38535 * 120.48423 * 179.97438 * 5 4 3 7 7 N 1.32911 * 119.03053 * 359.73335 * 5 4 3 8 8 C 1.32503 * 120.61017 * 0.53822 * 7 5 4 9 9 S 1.76196 * 119.18590 * 179.72402 * 8 7 5 10 10 C 1.81003 * 99.99843 * 359.73282 * 9 8 7 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72035 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 N 1.32469 * 120.35161 * 304.99645 * 3 2 1 20 20 H 1.09004 * 109.46531 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47429 * 300.00013 * 1 2 3 22 22 H 1.09000 * 109.47240 * 60.00547 * 1 2 3 23 23 H 1.08996 * 109.47429 * 239.99987 * 2 1 3 24 24 H 1.09000 * 109.47240 * 119.99453 * 2 1 3 25 25 H 1.08000 * 120.75240 * 359.95055 * 4 3 2 26 26 H 0.97006 * 119.99722 * 0.02562 * 6 5 4 27 27 H 0.96996 * 120.00075 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47363 * 60.00062 * 10 9 8 29 29 H 1.09001 * 109.47208 * 299.99509 * 10 9 8 30 30 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9099 1.8510 0.9762 5 6 3.3512 3.1756 0.9390 6 7 4.2311 3.6504 1.8979 7 7 2.9184 3.9725 -0.0326 8 6 2.0722 3.5226 -0.9477 9 16 1.5170 4.6136 -2.2149 10 6 2.4016 6.1204 -1.7422 11 6 2.0695 7.2235 -2.7138 12 1 1.3964 7.0339 -3.5367 13 6 2.6293 8.4735 -2.5549 14 7 3.4533 8.7030 -1.5560 15 14 2.2171 9.8411 -3.7588 16 1 1.2738 9.3296 -4.7851 17 1 1.5892 10.9712 -3.0281 18 1 3.4613 10.3098 -4.4204 19 7 1.6372 2.2705 -0.9364 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.2470 1.1783 1.7510 26 1 4.5456 3.0615 2.6017 27 1 4.5333 4.5715 1.8651 28 1 3.4751 5.9319 -1.7590 29 1 2.1007 6.4185 -0.7379 30 1 3.8474 9.5823 -1.4446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279136072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:18 Heat of formation + Delta-G solvation = 4.251259 kcal Electronic energy + Delta-G solvation = -14213.953511 eV Core-core repulsion = 11747.721945 eV Total energy + Delta-G solvation = -2466.231566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.75954 -36.85977 -35.39479 -35.25654 -32.27950 -31.01508 -30.64310 -25.92216 -25.62116 -24.73250 -22.42090 -19.39669 -19.12868 -18.29787 -17.01365 -16.55289 -16.47806 -16.28094 -16.11307 -15.24132 -14.86379 -14.72374 -14.35827 -14.30853 -13.36282 -12.82058 -12.79178 -12.65396 -12.49607 -12.37916 -12.02118 -11.59601 -11.49141 -11.14004 -11.00113 -10.71496 -10.18217 -9.54790 -8.60139 -8.32025 -6.47791 -0.04628 0.45021 0.53260 1.41826 1.42266 1.53927 1.62923 2.37825 2.52002 2.79598 3.02345 3.31038 3.73552 4.10460 4.23133 4.36777 4.43338 4.61142 4.80751 4.97378 5.05278 5.08113 5.18101 5.35117 5.47659 5.56231 5.83081 5.92818 6.19051 6.60398 6.75526 7.20651 7.26150 8.80223 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.005870 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.418441 B = 4768.800012 C = 5452.775416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C 0.193 3.807 4 C -0.297 4.297 5 C 0.429 3.571 6 N -0.820 5.820 7 N -0.613 5.613 8 C 0.330 3.670 9 S -0.047 6.047 10 C 0.089 3.911 11 C -0.547 4.547 12 H 0.069 0.931 13 C 0.018 3.982 14 N -0.920 5.920 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.560 5.560 20 H 0.086 0.914 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.182 0.818 26 H 0.428 0.572 27 H 0.407 0.593 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -15.559 7.703 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C 0.048 3.952 4 C -0.328 4.328 5 C 0.180 3.820 6 N -0.366 5.366 7 N -0.343 5.343 8 C -0.047 4.047 9 S 0.190 5.810 10 C -0.060 4.060 11 C -0.586 4.586 12 H 0.087 0.913 13 C -0.183 4.183 14 N -0.558 5.558 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.198 1.198 19 N -0.284 5.284 20 H 0.105 0.895 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.134 0.866 25 H 0.199 0.801 26 H 0.262 0.738 27 H 0.237 0.763 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.246 -14.998 6.125 16.248 hybrid contribution 1.492 0.921 1.557 2.345 sum 0.246 -14.077 7.682 16.038 Atomic orbital electron populations 1.21636 0.93877 1.02864 1.01469 1.20644 0.97084 0.87252 1.05216 1.22178 0.88893 0.96961 0.87185 1.22166 1.07938 0.95942 1.06724 1.18977 0.86786 0.89582 0.86668 1.42098 1.48393 1.16878 1.29198 1.68378 1.19079 1.39366 1.07505 1.24741 0.91221 0.93296 0.95449 1.85388 1.59180 1.05764 1.30626 1.20786 0.96262 0.90063 0.98855 1.21075 1.29829 0.95267 1.12443 0.91338 1.25933 0.93994 1.00850 0.97559 1.70104 1.30537 1.23782 1.31423 0.85180 0.78511 0.77703 0.78339 1.18549 1.19756 1.19769 1.68366 1.29586 1.02079 1.28338 0.89512 0.93472 0.93873 0.88914 0.86612 0.80110 0.73840 0.76315 0.96194 0.96212 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.78 71.98 0.70 -2.05 16 2 C -0.06 -1.23 6.36 29.85 0.19 -1.04 16 3 C 0.19 5.71 6.20 42.44 0.26 5.97 16 4 C -0.30 -7.82 9.65 22.59 0.22 -7.60 16 5 C 0.43 14.13 7.82 133.20 1.04 15.18 16 6 N -0.82 -19.51 9.06 -55.11 -0.50 -20.00 16 7 N -0.61 -26.76 9.17 -194.02 -1.78 -28.54 16 8 C 0.33 14.83 7.85 180.44 1.42 16.24 16 9 S -0.05 -2.27 22.17 -56.49 -1.25 -3.52 16 10 C 0.09 5.03 4.56 71.24 0.33 5.36 16 11 C -0.55 -31.91 9.13 25.60 0.23 -31.67 16 12 H 0.07 3.89 7.71 -2.91 -0.02 3.87 16 13 C 0.02 1.03 5.46 84.66 0.46 1.50 16 14 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 15 Si 0.98 43.89 29.54 68.60 2.03 45.91 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 N -0.56 -21.85 9.99 -184.78 -1.85 -23.70 16 20 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 21 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.04 1.07 7.98 -2.39 -0.02 1.06 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 24 H 0.12 1.36 7.93 -2.39 -0.02 1.34 16 25 H 0.18 2.90 8.00 -2.91 -0.02 2.88 16 26 H 0.43 6.14 8.84 -92.70 -0.82 5.32 16 27 H 0.41 10.40 8.95 -92.71 -0.83 9.57 16 28 H 0.02 1.21 8.11 -2.39 -0.02 1.19 16 29 H 0.02 1.20 8.11 -2.39 -0.02 1.18 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.39 279.70 1.31 -71.08 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.48 Total: 11.66 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.85 Total: 1.88 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -3.84 Total: -127.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -1.25 Total: -3.52 kcal Total: -72.39 1.31 -71.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279136072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.329 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds