Wall clock time and date at job start Sun Mar 29 2020 22:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99992 * 2 1 4 4 C 1.50703 * 120.00496 * 179.97438 * 2 1 3 5 5 S 1.81001 * 109.47000 * 104.99861 * 4 2 1 6 6 C 1.76200 * 99.99813 * 180.02562 * 5 4 2 7 7 N 1.32394 * 126.25874 * 359.97384 * 6 5 4 8 8 N 1.28516 * 110.20034 * 180.02562 * 7 6 5 9 9 C 1.33095 * 109.75073 * 0.02562 * 8 7 6 10 10 C 1.39771 * 126.56547 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00111 * 188.22178 * 10 9 8 12 12 C 1.40084 * 120.00218 * 8.21795 * 10 9 8 13 13 N 1.30817 * 119.99946 * 191.23483 * 12 10 9 14 14 Si 1.86798 * 119.99751 * 11.23165 * 12 10 9 15 15 H 1.48506 * 109.46877 * 270.00124 * 14 12 10 16 16 H 1.48499 * 109.47207 * 29.99996 * 14 12 10 17 17 H 1.48496 * 109.47289 * 150.00071 * 14 12 10 18 18 N 1.36672 * 126.26147 * 180.30773 * 6 5 4 19 19 C 1.46501 * 127.14877 * 359.97438 * 18 6 5 20 20 H 1.08004 * 119.99770 * 180.02562 * 1 2 3 21 21 H 1.07999 * 120.00180 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46918 * 270.00088 * 3 2 1 23 23 H 1.09000 * 109.46986 * 29.99777 * 3 2 1 24 24 H 1.08997 * 109.47801 * 150.00128 * 3 2 1 25 25 H 1.09004 * 109.46463 * 344.99898 * 4 2 1 26 26 H 1.08994 * 109.47587 * 225.00261 * 4 2 1 27 27 H 0.96998 * 119.99838 * 354.77302 * 13 12 10 28 28 H 1.09004 * 109.46941 * 270.14226 * 19 18 6 29 29 H 1.09008 * 109.47284 * 30.13706 * 19 18 6 30 30 H 1.08993 * 109.47266 * 150.14108 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 16 2.7477 -1.6074 -1.6476 6 6 3.5512 -3.1502 -1.3671 7 7 3.5847 -3.8193 -0.2252 8 7 4.2561 -4.9060 -0.3671 9 6 4.6985 -5.0011 -1.6188 10 6 5.4648 -6.0401 -2.1544 11 1 5.8793 -5.9489 -3.1475 12 6 5.6952 -7.1998 -1.4031 13 7 6.5832 -8.0729 -1.8036 14 14 4.7345 -7.4993 0.1706 15 1 5.4684 -6.9086 1.3186 16 1 3.3954 -6.8668 0.0611 17 1 4.5759 -8.9603 0.3834 18 7 4.2591 -3.8720 -2.2867 19 6 4.5003 -3.5238 -3.6892 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 2.2451 1.6197 -1.0277 23 1 1.4743 2.0648 0.5138 24 1 3.0159 1.1749 0.5138 25 1 1.3855 -2.1159 0.2670 26 1 2.8745 -1.2561 0.7272 27 1 7.0273 -7.9559 -2.6580 28 1 3.7007 -3.9318 -4.3075 29 1 4.5241 -2.4391 -3.7954 30 1 5.4552 -3.9412 -4.0082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279819861.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:14 Heat of formation + Delta-G solvation = 65.411888 kcal Electronic energy + Delta-G solvation = -14457.939314 eV Core-core repulsion = 11994.359873 eV Total energy + Delta-G solvation = -2463.579442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91331 -36.07355 -33.92522 -33.56350 -30.03657 -27.97847 -27.15110 -26.67416 -25.21997 -21.42699 -20.29855 -18.61530 -18.18736 -16.58961 -15.37650 -15.12514 -14.79564 -14.53392 -14.25044 -13.74719 -13.35782 -12.97695 -12.64603 -12.58520 -12.16077 -11.97372 -11.74668 -11.24193 -11.10733 -10.90383 -10.49394 -9.95337 -9.61889 -9.38664 -9.08771 -8.99776 -8.65441 -8.39385 -7.43922 -7.06526 -4.82644 1.51531 2.42259 2.79960 2.91181 3.52472 3.60133 3.90292 4.02184 4.10544 4.37644 4.67716 4.84318 5.09879 5.36879 5.38086 5.56560 5.59787 5.72733 5.80204 5.88461 5.90400 5.93097 6.38908 6.49613 6.66203 6.73262 7.13441 7.40021 7.54237 8.04781 8.36024 8.56186 9.95767 10.12377 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.042158 B = 0.006508 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.016582 B = 4301.178149 C = 4785.242810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.059 4.059 5 S -0.043 6.043 6 C 0.064 3.936 7 N -0.273 5.273 8 N -0.411 5.411 9 C 0.343 3.657 10 C -0.494 4.494 11 H 0.083 0.917 12 C 0.067 3.933 13 N -0.808 5.808 14 Si 1.105 2.895 15 H -0.277 1.277 16 H -0.256 1.256 17 H -0.310 1.310 18 N -0.512 5.512 19 C 0.102 3.898 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.284 0.716 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 13.147 -1.236 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.115 4.115 3 C -0.175 4.175 4 C -0.207 4.207 5 S 0.186 5.814 6 C -0.310 4.310 7 N -0.116 5.116 8 N -0.260 5.260 9 C 0.100 3.900 10 C -0.535 4.535 11 H 0.101 0.899 12 C -0.156 4.156 13 N -0.432 5.432 14 Si 0.932 3.068 15 H -0.203 1.203 16 H -0.181 1.181 17 H -0.240 1.240 18 N -0.213 5.213 19 C -0.043 4.043 20 H 0.120 0.880 21 H 0.120 0.880 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.848 12.418 0.426 14.696 hybrid contribution 0.813 0.533 -1.940 2.170 sum -7.036 12.951 -1.514 14.817 Atomic orbital electron populations 1.23772 0.94921 1.02208 1.00805 1.21311 0.95193 0.94313 1.00634 1.20859 1.00324 0.93890 1.02429 1.22390 1.03115 0.97943 0.97254 1.84644 1.64413 1.16377 1.15915 1.25499 1.11231 1.02709 0.91538 1.74263 1.16283 1.02146 1.18939 1.74206 1.23478 1.14226 1.14128 1.21676 0.93847 0.86580 0.87926 1.19360 1.30043 0.99707 1.04421 0.89931 1.27297 0.93383 0.90512 1.04432 1.70657 1.16194 1.35971 1.20353 0.82908 0.78703 0.72321 0.72845 1.20302 1.18073 1.24011 1.45870 1.45481 1.19966 1.10009 1.21533 1.02214 1.00591 0.79917 0.88049 0.88002 0.91172 0.91768 0.91475 0.88582 0.88397 0.90509 0.92139 0.91212 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 13.90 29.02 0.40 -1.46 16 2 C -0.11 -1.35 5.31 -101.06 -0.54 -1.89 16 3 C -0.12 -1.19 10.03 36.01 0.36 -0.83 16 4 C -0.06 -0.90 5.42 36.01 0.20 -0.70 16 5 S -0.04 -0.74 21.77 -107.50 -2.34 -3.08 16 6 C 0.06 1.47 8.09 -87.27 -0.71 0.77 16 7 N -0.27 -7.10 11.62 30.89 0.36 -6.74 16 8 N -0.41 -11.56 7.50 31.26 0.23 -11.32 16 9 C 0.34 9.28 7.21 -154.82 -1.12 8.16 16 10 C -0.49 -13.40 9.47 -38.32 -0.36 -13.76 16 11 H 0.08 2.17 7.46 -52.48 -0.39 1.78 16 12 C 0.07 1.81 5.52 -17.29 -0.10 1.72 16 13 N -0.81 -21.84 13.65 55.56 0.76 -21.08 16 14 Si 1.10 27.89 26.40 -169.99 -4.49 23.40 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.26 -6.73 6.25 56.52 0.35 -6.37 16 17 H -0.31 -7.48 7.11 56.52 0.40 -7.07 16 18 N -0.51 -12.08 3.26 -123.18 -0.40 -12.48 16 19 C 0.10 1.84 10.89 59.85 0.65 2.49 16 20 H 0.10 1.07 7.90 -52.48 -0.41 0.66 16 21 H 0.10 0.87 8.04 -52.49 -0.42 0.44 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 24 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 25 H 0.10 1.55 7.86 -51.91 -0.41 1.14 16 26 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 27 H 0.28 7.28 8.73 -40.82 -0.36 6.93 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.09 7.85 -51.92 -0.41 0.68 16 30 H 0.08 1.37 7.47 -51.93 -0.39 0.98 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -31.13 276.41 -6.66 -37.79 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -3.74 Total: -5.15 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.21 Total: -5.50 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.95 Total: -51.62 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: -4.49 Total: 23.40 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.34 Total: -3.08 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.13 -6.66 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279819861.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.201 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds