Wall clock time and date at job start Sun Mar 29 2020 22:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99992 * 2 1 4 4 C 1.50703 * 120.00496 * 179.97438 * 2 1 3 5 5 S 1.81001 * 109.47000 * 104.99861 * 4 2 1 6 6 C 1.76200 * 99.99813 * 180.02562 * 5 4 2 7 7 N 1.32394 * 126.25874 * 359.97384 * 6 5 4 8 8 N 1.28516 * 110.20034 * 180.02562 * 7 6 5 9 9 C 1.33095 * 109.75073 * 0.02562 * 8 7 6 10 10 C 1.39771 * 126.56547 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00111 * 188.22178 * 10 9 8 12 12 C 1.40084 * 120.00218 * 8.21795 * 10 9 8 13 13 N 1.30817 * 119.99946 * 191.23483 * 12 10 9 14 14 Si 1.86798 * 119.99751 * 11.23165 * 12 10 9 15 15 H 1.48506 * 109.46877 * 270.00124 * 14 12 10 16 16 H 1.48499 * 109.47207 * 29.99996 * 14 12 10 17 17 H 1.48496 * 109.47289 * 150.00071 * 14 12 10 18 18 N 1.36672 * 126.26147 * 180.30773 * 6 5 4 19 19 C 1.46501 * 127.14877 * 359.97438 * 18 6 5 20 20 H 1.08004 * 119.99770 * 180.02562 * 1 2 3 21 21 H 1.07999 * 120.00180 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46918 * 270.00088 * 3 2 1 23 23 H 1.09000 * 109.46986 * 29.99777 * 3 2 1 24 24 H 1.08997 * 109.47801 * 150.00128 * 3 2 1 25 25 H 1.09004 * 109.46463 * 344.99898 * 4 2 1 26 26 H 1.08994 * 109.47587 * 225.00261 * 4 2 1 27 27 H 0.96998 * 119.99838 * 354.77302 * 13 12 10 28 28 H 1.09004 * 109.46941 * 270.14226 * 19 18 6 29 29 H 1.09008 * 109.47284 * 30.13706 * 19 18 6 30 30 H 1.08993 * 109.47266 * 150.14108 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 16 2.7477 -1.6074 -1.6476 6 6 3.5512 -3.1502 -1.3671 7 7 3.5847 -3.8193 -0.2252 8 7 4.2561 -4.9060 -0.3671 9 6 4.6985 -5.0011 -1.6188 10 6 5.4648 -6.0401 -2.1544 11 1 5.8793 -5.9489 -3.1475 12 6 5.6952 -7.1998 -1.4031 13 7 6.5832 -8.0729 -1.8036 14 14 4.7345 -7.4993 0.1706 15 1 5.4684 -6.9086 1.3186 16 1 3.3954 -6.8668 0.0611 17 1 4.5759 -8.9603 0.3834 18 7 4.2591 -3.8720 -2.2867 19 6 4.5003 -3.5238 -3.6892 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 2.2451 1.6197 -1.0277 23 1 1.4743 2.0648 0.5138 24 1 3.0159 1.1749 0.5138 25 1 1.3855 -2.1159 0.2670 26 1 2.8745 -1.2561 0.7272 27 1 7.0273 -7.9559 -2.6580 28 1 3.7007 -3.9318 -4.3075 29 1 4.5241 -2.4391 -3.7954 30 1 5.4552 -3.9412 -4.0082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279819861.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:14 Heat of formation + Delta-G solvation = 47.342261 kcal Electronic energy + Delta-G solvation = -14458.722872 eV Core-core repulsion = 11994.359873 eV Total energy + Delta-G solvation = -2464.363000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.83989 -37.01102 -35.93352 -35.38964 -32.00691 -29.13169 -28.34208 -27.98269 -27.10833 -23.32893 -22.19763 -20.19215 -19.65442 -18.14509 -17.09269 -16.87270 -16.06364 -15.83487 -15.72930 -15.37039 -15.00547 -14.68772 -14.21199 -13.79843 -13.54324 -13.25805 -13.06858 -12.86153 -12.58942 -12.18888 -12.00168 -11.85643 -11.57248 -11.39641 -10.88620 -10.55686 -10.37612 -9.96702 -9.50068 -8.68548 -6.85184 0.17189 0.98066 1.01582 1.49335 1.59834 1.67142 1.94582 2.08032 2.21900 2.39383 3.03300 3.68821 3.85665 3.92601 4.32193 4.35959 4.47539 4.55133 4.67243 4.71242 4.74838 4.86749 5.00483 5.16076 5.23392 5.36815 5.61666 5.69320 5.85761 6.00048 6.39380 6.57345 7.91601 8.15621 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.042158 B = 0.006508 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.016582 B = 4301.178149 C = 4785.242810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C -0.116 4.116 4 C -0.058 4.058 5 S 0.004 5.996 6 C 0.076 3.924 7 N -0.314 5.314 8 N -0.442 5.442 9 C 0.322 3.678 10 C -0.511 4.511 11 H 0.083 0.917 12 C 0.044 3.956 13 N -0.823 5.823 14 Si 1.137 2.863 15 H -0.287 1.287 16 H -0.276 1.276 17 H -0.294 1.294 18 N -0.515 5.515 19 C 0.093 3.907 20 H 0.099 0.901 21 H 0.131 0.869 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.286 0.714 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 15.434 -1.860 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.173 4.173 4 C -0.206 4.206 5 S 0.233 5.767 6 C -0.298 4.298 7 N -0.157 5.157 8 N -0.290 5.290 9 C 0.075 3.925 10 C -0.552 4.552 11 H 0.101 0.899 12 C -0.176 4.176 13 N -0.448 5.448 14 Si 0.964 3.036 15 H -0.214 1.214 16 H -0.202 1.202 17 H -0.222 1.222 18 N -0.215 5.215 19 C -0.049 4.049 20 H 0.117 0.883 21 H 0.149 0.851 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.238 14.692 -0.220 17.357 hybrid contribution 1.069 0.080 -1.778 2.076 sum -8.168 14.772 -1.997 16.998 Atomic orbital electron populations 1.24055 0.94413 1.03535 0.97564 1.21291 0.95636 0.93352 1.03204 1.20875 1.00181 0.93282 1.02925 1.22494 1.02796 0.99680 0.95662 1.84523 1.62906 1.11867 1.17434 1.26666 1.08676 1.03953 0.90527 1.74193 1.18214 1.02624 1.20641 1.74083 1.24289 1.15514 1.15147 1.21766 0.94568 0.87865 0.88281 1.19367 1.31080 1.00127 1.04621 0.89891 1.27731 0.93668 0.90753 1.05425 1.70651 1.16922 1.36402 1.20874 0.82426 0.76965 0.72711 0.71449 1.21385 1.20233 1.22226 1.46242 1.44479 1.18930 1.11880 1.21902 1.03191 1.02642 0.77198 0.88294 0.85105 0.90788 0.89550 0.92152 0.89757 0.89565 0.90234 0.90287 0.88339 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 13.90 67.79 0.94 -1.77 16 2 C -0.13 -2.81 5.31 -16.48 -0.09 -2.90 16 3 C -0.12 -1.96 10.03 71.24 0.71 -1.25 16 4 C -0.06 -1.68 5.42 71.24 0.39 -1.30 16 5 S 0.00 0.12 21.77 -56.49 -1.23 -1.11 16 6 C 0.08 3.46 8.09 179.18 1.45 4.91 16 7 N -0.31 -16.47 11.62 -56.17 -0.65 -17.12 16 8 N -0.44 -25.26 7.50 -55.02 -0.41 -25.67 16 9 C 0.32 17.56 7.21 133.23 0.96 18.52 16 10 C -0.51 -28.00 9.47 23.09 0.22 -27.78 16 11 H 0.08 4.40 7.46 -2.91 -0.02 4.38 16 12 C 0.04 2.44 5.52 85.29 0.47 2.92 16 13 N -0.82 -44.79 13.65 21.86 0.30 -44.49 16 14 Si 1.14 57.88 26.40 68.60 1.81 59.69 16 15 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 16 H -0.28 -14.86 6.25 99.48 0.62 -14.24 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 N -0.52 -23.83 3.26 -543.62 -1.77 -25.60 16 19 C 0.09 3.15 10.89 127.77 1.39 4.54 16 20 H 0.10 1.80 7.90 -2.91 -0.02 1.77 16 21 H 0.13 1.58 8.04 -2.91 -0.02 1.56 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.08 8.06 -2.39 -0.02 1.06 16 24 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 25 H 0.08 2.65 7.86 -2.39 -0.02 2.63 16 26 H 0.09 2.71 8.14 -2.40 -0.02 2.69 16 27 H 0.29 14.83 8.73 -92.71 -0.81 14.02 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.10 2.75 7.85 -2.38 -0.02 2.74 16 30 H 0.08 2.76 7.47 -2.39 -0.02 2.74 16 Total: -1.00 -67.25 276.41 5.50 -61.75 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: 1.01 Total: -3.35 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.45 Total: -4.11 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -2.54 Total: -112.87 kcal Atomic # 14 Polarization: 57.88 SS G_CDS: 1.81 Total: 59.69 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.23 Total: -1.11 kcal Total: -67.25 5.50 -61.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279819861.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.095 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds