Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34760 * 116.99641 * 2 1 4 4 O 1.21511 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.47360 * 119.99485 * 179.97438 * 3 2 1 6 6 N 1.31912 * 126.49273 * 0.04011 * 5 3 2 7 7 N 1.28419 * 110.34545 * 179.72138 * 6 5 3 8 8 H 0.97005 * 124.85558 * 180.25817 * 7 6 5 9 9 C 1.35692 * 110.29007 * 0.40092 * 7 6 5 10 10 C 1.36333 * 107.01496 * 359.60683 * 9 7 6 11 11 N 1.39721 * 127.33461 * 180.25956 * 10 9 7 12 12 C 1.34768 * 120.00178 * 359.97438 * 11 10 9 13 13 O 1.21782 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.41795 * 120.00152 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99942 * 0.02562 * 14 12 11 16 16 C 1.40133 * 120.00456 * 180.02562 * 14 12 11 17 17 N 1.30635 * 119.99907 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00616 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47126 * 59.99610 * 18 16 14 20 20 H 1.48498 * 109.47643 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46974 * 300.00476 * 18 16 14 22 22 H 1.09008 * 109.46458 * 60.00306 * 1 2 3 23 23 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47347 * 300.00573 * 1 2 3 25 25 H 1.08002 * 126.49628 * 179.87787 * 9 7 6 26 26 H 0.97004 * 119.99791 * 179.97438 * 11 10 9 27 27 H 0.96995 * 120.00578 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5354 1.2778 0.0006 6 7 4.3743 0.2598 0.0004 7 7 5.5874 0.6810 -0.0048 8 1 6.3722 0.1109 -0.0096 9 6 5.6146 2.0377 0.0005 10 6 4.3192 2.4626 0.0006 11 7 3.8603 3.7823 0.0001 12 6 4.7413 4.8021 0.0000 13 8 5.9374 4.5734 -0.0002 14 6 4.2756 6.1414 -0.0010 15 1 3.2148 6.3442 -0.0013 16 6 5.1916 7.2019 -0.0017 17 7 6.4748 6.9566 -0.0009 18 14 4.5782 8.9662 -0.0023 19 1 3.7546 9.2043 1.2103 20 1 5.7379 9.8936 -0.0023 21 1 3.7540 9.2032 -1.2147 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 6.4955 2.6625 -0.0002 26 1 2.9075 3.9645 -0.0001 27 1 7.1089 7.6905 -0.0017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281446810.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = -47.224522 kcal Electronic energy + Delta-G solvation = -16570.370929 eV Core-core repulsion = 13523.321241 eV Total energy + Delta-G solvation = -3047.049689 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.05496 -39.79904 -37.69021 -36.14992 -33.61216 -32.45329 -31.12273 -29.17605 -27.71017 -26.42915 -23.94414 -21.93492 -20.26228 -19.38108 -18.12812 -17.19300 -16.82369 -16.27589 -16.22334 -15.44389 -14.94212 -14.74662 -13.97674 -13.60743 -13.01493 -12.82065 -12.54341 -12.37208 -12.01635 -11.40773 -11.13096 -10.68381 -10.63443 -10.59420 -10.39639 -10.31332 -9.91843 -8.99931 -8.87723 -7.79621 -6.99300 -6.39231 -4.89004 1.67220 2.77765 2.79504 3.09525 3.13919 3.16298 3.42908 3.55875 4.00331 4.45091 4.63516 5.05601 5.17884 5.25578 5.40078 5.58156 5.73851 5.84352 6.31783 6.51019 6.65129 7.24887 7.47134 7.83975 7.99231 8.04051 8.16528 8.37040 8.80663 9.31844 10.36693 10.55961 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.006653 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.876973 B = 4207.564975 C = 5053.297070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.561 3.439 4 O -0.508 6.508 5 C -0.063 4.063 6 N -0.238 5.238 7 N -0.368 5.368 8 H 0.446 0.554 9 C -0.065 4.065 10 C 0.140 3.860 11 N -0.664 5.664 12 C 0.546 3.454 13 O -0.572 6.572 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.089 3.911 17 N -0.749 5.749 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.213 0.787 26 H 0.405 0.595 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -9.759 -0.015 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.264 6.264 3 C 0.405 3.595 4 O -0.393 6.393 5 C -0.221 4.221 6 N -0.080 5.080 7 N -0.087 5.087 8 H 0.290 0.710 9 C -0.211 4.211 10 C 0.031 3.969 11 N -0.308 5.308 12 C 0.355 3.645 13 O -0.456 6.456 14 C -0.569 4.569 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.377 5.377 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.081 0.919 25 H 0.229 0.771 26 H 0.240 0.760 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.690 -10.496 -0.013 11.497 hybrid contribution -0.613 1.526 0.000 1.645 sum -5.303 -8.970 -0.014 10.420 Atomic orbital electron populations 1.23247 0.76620 1.03356 1.02559 1.86641 1.22850 1.32420 1.84458 1.19541 0.86334 0.81368 0.72292 1.90818 1.65559 1.35943 1.47028 1.20234 0.90428 0.90381 1.21028 1.73391 0.90436 1.25964 1.18239 1.43255 1.05960 1.07078 1.52439 0.71009 1.23595 1.00343 0.82792 1.14409 1.17874 0.91145 0.86093 1.01751 1.43780 1.11342 1.00914 1.74766 1.17060 0.85011 0.84365 0.78021 1.90485 1.15547 1.83732 1.55833 1.19991 0.94644 0.89663 1.52633 0.90970 1.25747 0.94300 1.01044 0.92303 1.69985 1.01892 1.33381 1.32403 0.86308 0.79002 0.81031 0.79809 1.18993 1.20370 1.18988 0.91919 0.88296 0.91925 0.77100 0.75966 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.47 15 2 O -0.35 -5.50 10.58 -40.65 -0.43 -5.93 15 3 C 0.56 10.50 7.96 34.44 0.27 10.78 15 4 O -0.51 -10.17 15.15 -19.27 -0.29 -10.46 15 5 C -0.06 -1.26 7.17 -82.66 -0.59 -1.85 15 6 N -0.24 -4.23 12.22 33.47 0.41 -3.82 15 7 N -0.37 -5.77 6.85 30.78 0.21 -5.56 15 8 H 0.45 4.77 8.96 -190.46 -1.71 3.06 15 9 C -0.06 -1.29 10.92 -16.53 -0.18 -1.47 15 10 C 0.14 3.12 6.99 -83.49 -0.58 2.54 15 11 N -0.66 -16.19 5.41 -12.26 -0.07 -16.25 15 12 C 0.55 15.29 7.54 -14.90 -0.11 15.17 15 13 O -0.57 -17.09 12.15 5.12 0.06 -17.03 15 14 C -0.53 -14.77 9.31 -37.51 -0.35 -15.12 15 15 H 0.07 1.85 7.85 -52.49 -0.41 1.44 15 16 C 0.09 2.38 5.50 -17.35 -0.10 2.28 15 17 N -0.75 -21.18 11.73 55.55 0.65 -20.53 15 18 Si 0.91 19.42 29.56 -169.99 -5.02 14.40 15 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 20 H -0.28 -5.74 7.11 56.52 0.40 -5.33 15 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 22 H 0.06 0.68 8.14 -51.92 -0.42 0.26 15 23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.21 4.54 6.01 -52.49 -0.32 4.22 15 26 H 0.40 9.40 7.10 -40.82 -0.29 9.11 15 27 H 0.27 6.97 8.29 -40.82 -0.34 6.63 15 LS Contribution 253.56 15.07 3.82 3.82 Total: -1.00 -33.45 253.56 -4.36 -37.80 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.13 Total: 9.76 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -0.57 Total: 13.80 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.21 Total: -46.17 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.66 Total: -33.42 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.45 -4.36 -37.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281446810.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.420 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds