Wall clock time and date at job start Sun Mar 29 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47055 * 282.51415 * 3 2 1 5 5 C 1.37093 * 119.99845 * 264.14791 * 4 3 2 6 6 H 1.08004 * 120.00374 * 197.38524 * 5 4 3 7 7 C 1.38950 * 120.00147 * 17.38220 * 5 4 3 8 8 N 1.31414 * 119.99851 * 21.60404 * 7 5 4 9 9 Si 1.86801 * 120.00191 * 201.60181 * 7 5 4 10 10 H 1.48497 * 109.47100 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46946 * 119.99886 * 9 7 5 12 12 H 1.48499 * 109.47326 * 240.00139 * 9 7 5 13 13 C 1.34769 * 119.99798 * 84.14968 * 4 3 2 14 14 O 1.21297 * 120.00074 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00358 * 359.97438 * 13 4 3 16 16 H 1.08992 * 110.84835 * 338.41923 * 15 13 4 17 17 C 1.54265 * 110.78840 * 215.00005 * 15 13 4 18 18 C 1.52333 * 112.47499 * 217.12646 * 17 15 13 19 19 C 1.54260 * 112.58957 * 0.07357 * 18 17 15 20 20 S 1.83763 * 110.68256 * 101.79423 * 15 13 4 21 21 H 4.40638 * 5.51407 * 179.97438 * 4 1 2 22 22 H 1.09005 * 109.47051 * 162.51288 * 3 2 1 23 23 H 1.09003 * 109.47380 * 42.51406 * 3 2 1 24 24 H 0.97001 * 119.99618 * 179.97438 * 8 7 5 25 25 H 1.08991 * 108.86532 * 96.37650 * 17 15 13 26 26 H 1.08998 * 108.86329 * 337.87178 * 17 15 13 27 27 H 1.09001 * 108.86941 * 120.89164 * 18 17 15 28 28 H 1.09002 * 108.86676 * 239.24846 * 18 17 15 29 29 H 1.08994 * 110.78643 * 142.80112 * 19 18 17 30 30 H 1.09000 * 110.78624 * 266.25625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2984 1.3484 5 6 3.4766 0.7235 2.1958 6 1 4.0885 0.5239 3.0631 7 6 3.0362 2.0161 1.9389 8 7 1.9844 2.2124 1.1759 9 14 3.9391 3.4747 2.6782 10 1 5.0818 2.9886 3.4924 11 1 4.4443 4.3481 1.5886 12 1 3.0092 4.2471 3.5408 13 6 3.2474 -1.5781 1.7557 14 8 3.6523 -1.8258 2.8720 15 6 2.8708 -2.7014 0.8244 16 1 2.1942 -2.3494 0.0458 17 6 2.2431 -3.8737 1.6063 18 6 2.6497 -5.2310 1.0467 19 6 3.5937 -5.1126 -0.1676 20 16 4.3715 -3.4653 0.0887 21 1 -1.0499 0.0002 0.0001 22 1 3.0089 0.9810 -0.3088 23 1 3.0097 -0.7567 -0.6945 24 1 1.6768 3.1147 0.9969 25 1 1.1577 -3.7853 1.5629 26 1 2.5597 -3.8126 2.6475 27 1 3.1521 -5.7990 1.8296 28 1 1.7523 -5.7707 0.7443 29 1 4.3452 -5.9019 -0.1518 30 1 3.0292 -5.1330 -1.0998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281631034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:41 Heat of formation + Delta-G solvation = 31.380192 kcal Electronic energy + Delta-G solvation = -15099.041447 eV Core-core repulsion = 12601.693529 eV Total energy + Delta-G solvation = -2497.347918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.79941 -35.72883 -34.88704 -32.23124 -31.27620 -29.59673 -26.57727 -25.63831 -24.15638 -20.81872 -18.94476 -17.92535 -16.87213 -16.41662 -16.31384 -15.06650 -14.54386 -14.23754 -13.95513 -13.72853 -13.09731 -12.57734 -12.45271 -12.13918 -12.00835 -11.59583 -11.37402 -11.10973 -11.01935 -10.51823 -10.33817 -10.21953 -9.62077 -9.42020 -9.32537 -8.95824 -8.54129 -7.92728 -7.35409 -6.40647 -3.90378 1.97000 2.54746 3.13355 3.23598 3.30838 3.65331 3.95055 4.09257 4.13378 4.66714 4.81912 4.93299 5.01715 5.25482 5.37996 5.41182 5.48132 5.68284 5.73759 5.84460 6.07474 6.23493 6.28868 6.51557 6.70568 6.97006 7.50287 7.97074 8.35860 8.74798 9.06628 9.27437 9.83550 10.59862 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.008134 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.918099 B = 3441.510700 C = 3815.585262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.116 4.116 3 C 0.227 3.773 4 N -0.428 5.428 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.857 5.857 9 Si 0.923 3.077 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.464 3.536 14 O -0.570 6.570 15 C -0.048 4.048 16 H 0.103 0.897 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.074 4.074 20 S -0.273 6.273 21 H 0.200 0.800 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.269 0.731 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -8.591 -5.455 10.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.145 5.145 5 C -0.439 4.439 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.494 5.494 9 Si 0.749 3.251 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.251 3.749 14 O -0.454 6.454 15 C -0.179 4.179 16 H 0.121 0.879 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.222 4.222 20 S -0.047 6.047 21 H 0.217 0.783 22 H 0.130 0.870 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.132 -8.115 -5.212 9.646 hybrid contribution -1.248 0.529 0.386 1.409 sum -1.380 -7.586 -4.826 9.097 Atomic orbital electron populations 1.24280 0.95356 1.05651 1.02303 1.23164 0.94327 0.96077 0.98185 1.18351 0.84295 1.02232 0.84732 1.43688 1.54894 1.04371 1.11581 1.19773 1.29885 0.85317 1.08907 0.87520 1.25337 0.95141 0.99225 0.97637 1.70105 1.19498 1.22455 1.37384 0.85920 0.79753 0.80597 0.78827 1.19058 1.20467 1.20786 1.19124 0.85575 0.82862 0.87387 1.90517 1.51043 1.82769 1.21028 1.24052 0.95667 0.97992 1.00199 0.87911 1.21964 1.00627 0.90611 1.02428 1.21971 0.99032 0.97951 0.96903 1.24134 1.00610 0.96628 1.00833 1.88070 1.22948 1.12244 1.81429 0.78265 0.87012 0.91609 0.92011 0.91067 0.88813 0.90756 0.91169 0.88117 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.24 19.25 29.55 0.57 -4.67 16 2 C -0.12 -2.59 10.69 -37.12 -0.40 -2.98 16 3 C 0.23 5.13 4.77 -6.83 -0.03 5.09 16 4 N -0.43 -10.96 2.60 -117.93 -0.31 -11.27 16 5 C -0.31 -8.58 9.33 -14.94 -0.14 -8.71 16 6 H 0.11 3.11 7.38 -52.48 -0.39 2.72 16 7 C 0.03 0.82 4.86 -17.47 -0.08 0.74 16 8 N -0.86 -22.24 9.49 55.50 0.53 -21.71 16 9 Si 0.92 20.35 29.60 -169.99 -5.03 15.32 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.46 11.52 6.72 -10.99 -0.07 11.44 16 14 O -0.57 -15.98 15.48 5.54 0.09 -15.89 16 15 C -0.05 -0.94 2.89 -27.22 -0.08 -1.01 16 16 H 0.10 1.93 5.74 -51.93 -0.30 1.63 16 17 C -0.12 -1.97 5.90 -26.41 -0.16 -2.12 16 18 C -0.12 -1.54 6.30 -26.41 -0.17 -1.70 16 19 C -0.07 -0.94 7.46 37.82 0.28 -0.65 16 20 S -0.27 -4.93 22.71 -107.50 -2.44 -7.37 16 21 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 22 H 0.11 2.64 6.44 -51.93 -0.33 2.31 16 23 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 24 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.09 1.80 6.88 -51.93 -0.36 1.44 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 269.36 15.07 4.06 4.06 Total: -1.00 -30.74 269.36 -6.78 -37.52 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.40 Total: 3.93 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.28 Total: -4.59 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.22 Total: -32.98 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.09 Total: -15.89 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.44 Total: -7.37 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.74 -6.78 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281631034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.903 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds