Wall clock time and date at job start Sun Mar 29 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 S 1.81396 * 109.47360 * 120.00191 * 2 1 3 14 14 C 1.76198 * 103.00030 * 295.00080 * 13 2 1 15 15 N 1.32468 * 120.14145 * 359.71960 * 14 13 2 16 16 C 1.32456 * 119.98701 * 179.76702 * 15 14 13 17 17 C 1.37896 * 120.27973 * 0.51581 * 16 15 14 18 18 N 1.32476 * 120.29323 * 359.74031 * 17 16 15 19 19 C 1.32381 * 120.00372 * 0.02562 * 18 17 16 20 20 N 1.39184 * 120.14220 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.07996 * 119.85907 * 180.25461 * 16 15 14 28 28 H 1.08002 * 119.85310 * 179.71858 * 17 16 15 29 29 H 0.96993 * 119.99971 * 179.97438 * 20 19 18 30 30 H 0.97004 * 119.99447 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 16 2.1347 -0.8551 1.4810 14 6 1.5828 0.1845 2.7922 15 7 0.9044 1.2902 2.5237 16 6 0.4870 2.0671 3.5120 17 6 0.7645 1.7360 4.8215 18 7 1.4464 0.6355 5.1024 19 6 1.8652 -0.1516 4.1238 20 7 2.5814 -1.3088 4.4157 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 4.0608 -2.2443 -4.0351 27 1 -0.0695 2.9659 3.2910 28 1 0.4247 2.3769 5.6217 29 1 2.8869 -1.8843 3.6971 30 1 2.7750 -1.5397 5.3377 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291321335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:49 Heat of formation + Delta-G solvation = 13.345496 kcal Electronic energy + Delta-G solvation = -14478.144799 eV Core-core repulsion = 12012.307589 eV Total energy + Delta-G solvation = -2465.837210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72936 -36.67018 -36.12392 -34.63374 -33.96219 -30.58717 -29.34054 -25.77500 -25.24803 -24.55333 -22.33392 -19.19403 -18.73812 -18.48355 -18.35232 -16.72692 -16.52606 -16.34621 -16.01232 -15.46477 -14.80288 -14.44634 -14.22353 -13.69082 -13.31562 -12.92189 -12.83372 -12.61469 -12.46892 -12.37194 -12.25538 -11.80864 -11.45486 -11.24558 -11.00422 -10.54289 -10.03349 -9.68635 -8.19759 -8.16632 -6.28448 -0.06068 0.33429 0.64309 1.40777 1.40901 1.49077 1.52248 2.41568 2.42029 2.80620 3.15183 3.46533 3.62894 4.03010 4.13571 4.27915 4.33220 4.51127 4.58094 4.92450 5.04220 5.21086 5.38634 5.40690 5.51908 5.77785 5.93962 6.18721 6.35380 6.62122 6.83381 7.05399 7.39515 8.92040 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.006624 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.867139 B = 4225.965902 C = 4619.399551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.036 4.036 3 H 0.072 0.928 4 C 0.043 3.957 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 S -0.074 6.074 14 C -0.010 4.010 15 N -0.433 5.433 16 C -0.012 4.012 17 C 0.093 3.907 18 N -0.507 5.507 19 C 0.367 3.633 20 N -0.825 5.825 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.003 0.997 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.198 0.802 28 H 0.211 0.789 29 H 0.416 0.584 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 5.071 15.750 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 H 0.091 0.909 4 C 0.005 3.995 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.192 1.192 13 S 0.165 5.835 14 C -0.269 4.269 15 N -0.151 5.151 16 C -0.176 4.176 17 C -0.069 4.069 18 N -0.232 5.232 19 C 0.119 3.881 20 N -0.372 5.372 21 H 0.091 0.909 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.022 0.978 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.215 0.785 28 H 0.228 0.772 29 H 0.248 0.752 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.577 3.948 15.539 16.673 hybrid contribution 0.399 0.747 -0.543 1.006 sum -4.178 4.695 14.995 16.259 Atomic orbital electron populations 1.21981 0.92525 1.01949 1.02740 1.23192 0.98666 1.00747 0.93961 0.90910 1.18890 0.95568 0.94498 0.90533 1.21541 0.92783 1.34301 1.08251 0.92148 1.25825 1.03232 0.94843 0.95214 1.70070 1.37482 1.36767 1.12721 0.85560 0.80025 0.78885 0.77313 1.19729 1.20745 1.19176 1.85376 1.69687 1.31605 0.96839 1.23760 1.06541 1.00561 0.95997 1.68653 1.07428 1.02280 1.36722 1.23945 1.02468 1.01448 0.89714 1.24009 0.92422 0.92268 0.98220 1.68059 1.15190 1.06829 1.33098 1.18920 0.91523 0.89483 0.88171 1.42218 1.59625 1.22729 1.12577 0.90937 0.92791 0.91686 0.97821 0.96680 0.92741 0.78521 0.77238 0.75214 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.03 71.98 0.65 -4.20 16 2 C -0.04 -1.56 2.28 30.60 0.07 -1.49 16 3 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 4 C 0.04 2.27 4.45 29.85 0.13 2.40 16 5 C -0.53 -29.77 8.53 25.60 0.22 -29.55 16 6 H 0.06 3.35 7.60 -2.91 -0.02 3.33 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 S -0.07 -2.89 19.20 -56.49 -1.08 -3.97 16 14 C -0.01 -0.34 6.87 85.08 0.58 0.24 16 15 N -0.43 -13.94 7.66 -191.17 -1.46 -15.40 16 16 C -0.01 -0.28 11.20 84.52 0.95 0.66 16 17 C 0.09 1.93 11.20 84.51 0.95 2.87 16 18 N -0.51 -13.38 10.52 -192.02 -2.02 -15.40 16 19 C 0.37 10.90 7.79 133.27 1.04 11.94 16 20 N -0.83 -20.08 9.03 -54.64 -0.49 -20.57 16 21 H 0.07 2.47 5.99 -2.39 -0.01 2.46 16 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.42 10.26 7.38 -92.71 -0.68 9.58 16 30 H 0.42 7.83 8.96 -92.71 -0.83 7.00 16 Total: -1.00 -67.43 272.44 1.95 -65.48 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -0.35 Total: 15.21 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.05 Total: -16.27 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.69 Total: -106.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -1.08 Total: -3.97 kcal Total: -67.43 1.95 -65.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291321335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.826 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds