Wall clock time and date at job start Sun Mar 29 2020 22:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47172 * 2 1 4 4 C 1.53000 * 109.46836 * 119.99915 * 2 1 3 5 5 C 1.50698 * 109.47084 * 184.99640 * 4 2 1 6 6 H 1.07999 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00336 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99775 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00400 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47445 * 89.99735 * 9 7 5 11 11 H 1.48497 * 109.47219 * 210.00147 * 9 7 5 12 12 H 1.48499 * 109.46849 * 329.99980 * 9 7 5 13 13 S 1.81401 * 109.47298 * 239.99736 * 2 1 3 14 14 C 1.76206 * 102.99778 * 65.00166 * 13 2 1 15 15 N 1.32468 * 120.14136 * 359.95403 * 14 13 2 16 16 C 1.32452 * 119.99022 * 179.97438 * 15 14 13 17 17 C 1.37897 * 120.28093 * 0.04692 * 16 15 14 18 18 N 1.32481 * 120.28888 * 359.97438 * 17 16 15 19 19 C 1.32384 * 120.00616 * 359.97438 * 18 17 16 20 20 N 1.39181 * 120.14118 * 179.72706 * 19 18 17 21 21 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.46936 * 300.00122 * 1 2 3 23 23 H 1.08997 * 109.46868 * 60.00089 * 1 2 3 24 24 H 1.08996 * 109.47481 * 305.00253 * 4 2 1 25 25 H 1.09006 * 109.47400 * 65.00497 * 4 2 1 26 26 H 0.97004 * 120.00008 * 179.97438 * 8 7 5 27 27 H 1.07991 * 119.86062 * 180.02562 * 16 15 14 28 28 H 1.07998 * 119.85781 * 179.97438 * 17 16 15 29 29 H 0.97005 * 119.99723 * 359.97438 * 20 19 18 30 30 H 0.96998 * 120.00007 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0856 0.5396 7 6 4.2303 -1.1927 2.3584 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0604 2.4374 10 1 6.4699 0.1623 3.1906 11 1 6.6444 -2.2554 3.1244 12 1 6.6416 -0.9830 1.0601 13 16 2.1348 -0.8552 -1.4811 14 6 1.5829 0.1846 -2.7922 15 7 0.8990 1.2869 -2.5241 16 6 0.4860 2.0666 -3.5119 17 6 0.7639 1.7358 -4.8215 18 7 1.4466 0.6358 -5.1023 19 6 1.8658 -0.1512 -4.1238 20 7 2.5784 -1.3105 -4.4159 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7517 -1.7716 1.2056 26 1 4.0607 -2.2437 4.0356 27 1 -0.0711 2.9650 -3.2909 28 1 0.4235 2.3763 -5.6216 29 1 2.7685 -1.5435 -5.3382 30 1 2.8842 -1.8858 -3.6974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291321336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:51 Heat of formation + Delta-G solvation = 33.975617 kcal Electronic energy + Delta-G solvation = -14477.650096 eV Core-core repulsion = 12012.707475 eV Total energy + Delta-G solvation = -2464.942621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60020 -35.36189 -34.45398 -33.46150 -32.00711 -29.47947 -27.43679 -24.62372 -23.42772 -23.29174 -20.60773 -18.04719 -17.48338 -17.23734 -16.35771 -15.39098 -15.11995 -14.82536 -14.55757 -14.27310 -13.34714 -12.98866 -12.53826 -11.88958 -11.64441 -11.55541 -11.18031 -11.15200 -10.88658 -10.69829 -10.56135 -10.42313 -9.55130 -9.45434 -9.18396 -8.86054 -8.48112 -8.39917 -6.82157 -6.05101 -4.07158 1.06061 1.46138 2.03801 2.95792 3.30959 3.37376 3.41802 3.49025 3.91857 4.43585 4.53431 4.71763 5.04925 5.32197 5.35604 5.44280 5.78159 5.90203 6.15383 6.33006 6.56422 6.64150 6.80300 7.02059 7.35369 7.50277 7.56988 7.70979 7.92105 8.12265 8.29436 8.97829 9.57075 11.06001 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.006623 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.722536 B = 4226.585224 C = 4619.954825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 H 0.086 0.914 4 C 0.035 3.965 5 C -0.520 4.520 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S -0.048 6.048 14 C 0.020 3.980 15 N -0.412 5.412 16 C -0.007 4.007 17 C 0.072 3.928 18 N -0.499 5.499 19 C 0.373 3.627 20 N -0.835 5.835 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.404 0.596 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 3.745 -13.589 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 H 0.105 0.895 4 C -0.003 4.003 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 0.192 5.808 14 C -0.240 4.240 15 N -0.130 5.130 16 C -0.169 4.169 17 C -0.090 4.090 18 N -0.223 5.223 19 C 0.124 3.876 20 N -0.381 5.381 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.233 0.767 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.587 2.648 -13.365 14.376 hybrid contribution 0.500 1.039 0.075 1.155 sum -4.088 3.687 -13.291 14.385 Atomic orbital electron populations 1.22082 0.94571 1.01707 1.01989 1.23539 0.97037 1.02188 0.94525 0.89547 1.19106 0.96472 0.95651 0.89071 1.21250 0.91542 1.34714 1.08389 0.91942 1.24985 0.98476 0.95133 0.95566 1.69957 1.35646 1.35733 1.12012 0.86592 0.85662 0.77524 0.78305 1.20673 1.21223 1.19673 1.85587 1.68030 1.30587 0.96630 1.24149 1.03558 0.99709 0.96545 1.68772 1.07375 1.02088 1.34793 1.23275 1.02837 1.00892 0.89909 1.23160 0.95340 0.93317 0.97134 1.67888 1.14589 1.06120 1.33702 1.18825 0.91399 0.88732 0.88649 1.42230 1.60765 1.23309 1.11774 0.92798 0.92251 0.92031 0.94419 0.95549 0.92904 0.82066 0.81978 0.76673 0.75177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.03 37.16 0.34 -2.28 16 2 C -0.04 -0.92 2.29 -26.73 -0.06 -0.98 16 3 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 4 C 0.04 0.89 4.45 -27.88 -0.12 0.76 16 5 C -0.52 -14.26 8.53 -34.44 -0.29 -14.55 16 6 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 S -0.05 -0.93 19.20 -107.50 -2.06 -2.99 16 14 C 0.02 0.36 6.87 -16.54 -0.11 0.24 16 15 N -0.41 -6.97 7.64 -11.78 -0.09 -7.06 16 16 C -0.01 -0.09 11.20 -17.41 -0.19 -0.29 16 17 C 0.07 0.90 11.20 -17.40 -0.19 0.70 16 18 N -0.50 -7.34 10.52 -12.05 -0.13 -7.47 16 19 C 0.37 5.84 7.79 -154.45 -1.20 4.64 16 20 N -0.83 -10.63 9.03 31.38 0.28 -10.35 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.07 5.97 -51.93 -0.31 0.76 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 27 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.40 4.12 8.96 -40.82 -0.37 3.75 16 30 H 0.42 5.22 7.39 -40.82 -0.30 4.92 16 LS Contribution 272.42 15.07 4.11 4.11 Total: -1.00 -30.95 272.42 -7.60 -38.55 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.47 Total: 4.45 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.95 Total: -10.16 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.80 Total: -50.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.06 Total: -2.99 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.95 -7.60 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291321336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.522 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds