Wall clock time and date at job start Sun Mar 29 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33363 * 122.55429 * 2 1 4 4 S 1.75852 * 109.71237 * 180.02562 * 3 2 1 5 5 C 1.75864 * 91.04896 * 0.02562 * 4 3 2 6 6 C 1.33819 * 109.59489 * 0.02562 * 5 4 3 7 7 N 1.40721 * 122.62236 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99871 * 353.85358 * 7 6 5 9 9 O 1.21308 * 120.00208 * 5.38849 * 8 7 6 10 10 C 1.50704 * 119.99962 * 185.38377 * 8 7 6 11 11 C 1.52998 * 109.47019 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46999 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00138 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00306 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47329 * 89.99448 * 16 14 12 18 18 H 1.48500 * 109.47076 * 209.99380 * 16 14 12 19 19 H 1.48500 * 109.46940 * 329.99480 * 16 14 12 20 20 H 1.09002 * 109.46744 * 89.97634 * 1 2 3 21 21 H 1.09000 * 109.46599 * 209.96730 * 1 2 3 22 22 H 1.08993 * 109.47236 * 329.97108 * 1 2 3 23 23 H 1.08005 * 125.14250 * 359.76293 * 3 2 1 24 24 H 1.07997 * 125.20396 * 180.02562 * 5 4 3 25 25 H 0.96999 * 119.99864 * 173.86421 * 7 6 5 26 26 H 1.08997 * 109.46843 * 299.99985 * 10 8 7 27 27 H 1.08991 * 109.47230 * 60.00376 * 10 8 7 28 28 H 1.08992 * 109.47608 * 299.99952 * 11 10 8 29 29 H 1.09004 * 109.47355 * 60.00122 * 11 10 8 30 30 H 0.96995 * 120.00196 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1241 0.0000 4 16 3.9391 0.7332 -0.0007 5 6 3.5797 -0.9883 -0.0018 6 6 2.2539 -1.1699 -0.0021 7 7 1.6632 -2.4472 -0.0024 8 6 2.4336 -3.5459 -0.1274 9 8 3.6421 -3.4410 -0.1413 10 6 1.7939 -4.9049 -0.2498 11 6 2.8831 -5.9717 -0.3774 12 6 2.2433 -7.3308 -0.4991 13 1 1.1674 -7.4241 -0.4872 14 6 3.0315 -8.4548 -0.6268 15 7 2.4732 -9.6408 -0.7336 16 14 4.8923 -8.2932 -0.6482 17 1 5.4135 -8.3889 0.7389 18 1 5.4744 -9.3832 -1.4719 19 1 5.2684 -6.9792 -1.2288 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3632 -0.8903 0.5133 22 1 -0.3633 0.8897 0.5142 23 1 1.8147 2.1233 -0.0037 24 1 4.3163 -1.7781 -0.0021 25 1 0.7015 -2.5367 0.0871 26 1 1.1924 -5.1044 0.6370 27 1 1.1567 -4.9282 -1.1338 28 1 3.4850 -5.7723 -1.2639 29 1 3.5200 -5.9483 0.5069 30 1 3.0277 -10.4315 -0.8231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292004982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:08 Heat of formation + Delta-G solvation = -9.914530 kcal Electronic energy + Delta-G solvation = -14313.946881 eV Core-core repulsion = 11814.808290 eV Total energy + Delta-G solvation = -2499.138591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.32978 -37.86779 -33.80243 -33.60115 -31.50780 -30.46049 -27.51723 -26.00246 -23.45485 -21.28355 -19.89349 -19.09803 -18.06549 -16.90647 -15.87078 -15.60613 -15.33480 -14.31775 -14.16882 -14.09534 -13.62340 -12.96732 -12.92973 -12.60226 -12.31284 -12.14680 -12.10216 -11.48352 -11.02166 -10.94044 -10.38286 -10.22523 -10.09328 -9.81493 -9.24707 -9.19218 -8.58840 -8.54464 -7.78571 -6.06524 -4.05948 1.03462 1.69340 2.01483 2.39228 3.19967 3.35159 3.35938 3.42481 3.52232 4.47590 4.76805 4.91245 5.10517 5.18446 5.28861 5.38549 5.54557 5.81726 5.88514 5.96780 5.97986 6.09306 6.25912 6.59092 6.77594 7.28735 7.35925 7.58662 7.73803 8.37688 8.49110 8.95758 9.56095 11.06216 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044939 B = 0.005098 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.916923 B = 5491.531063 C = 6084.626267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.117 4.117 3 C -0.210 4.210 4 S 0.086 5.914 5 C -0.241 4.241 6 C 0.126 3.874 7 N -0.662 5.662 8 C 0.510 3.490 9 O -0.517 6.517 10 C -0.119 4.119 11 C 0.001 3.999 12 C -0.527 4.527 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.261 1.261 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.164 0.836 24 H 0.203 0.797 25 H 0.409 0.591 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 21.378 1.729 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.345 4.345 4 S 0.348 5.652 5 C -0.380 4.380 6 C 0.021 3.979 7 N -0.307 5.307 8 C 0.300 3.700 9 O -0.393 6.393 10 C -0.159 4.159 11 C -0.037 4.037 12 C -0.565 4.565 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.186 1.186 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.182 0.818 24 H 0.219 0.781 25 H 0.245 0.755 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.216 22.019 1.675 22.117 hybrid contribution -0.856 -0.845 0.032 1.203 sum -2.072 21.175 1.708 21.344 Atomic orbital electron populations 1.20489 0.89584 1.02775 1.02509 1.18604 0.97334 0.91041 1.06269 1.25176 0.96486 1.01682 1.11192 1.84202 1.05629 1.01343 1.74052 1.26490 0.99721 0.98820 1.12938 1.16744 0.91542 0.85364 1.04267 1.43761 1.11196 1.03312 1.72412 1.21812 0.87458 0.86542 0.74207 1.90440 1.14969 1.85796 1.48090 1.21704 1.01447 0.89117 1.03645 1.19391 0.93607 0.92938 0.97749 1.21077 0.95196 0.89191 1.51004 0.90868 1.24960 0.98767 0.95143 0.94260 1.69905 1.35769 0.98106 1.50317 0.86801 0.85963 0.78287 0.78541 1.20203 1.21385 1.18550 0.90948 0.91688 0.91139 0.81812 0.78091 0.75475 0.89177 0.89073 0.95680 0.96126 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.85 36.00 0.35 -0.40 16 2 C -0.12 -1.34 5.81 -106.12 -0.62 -1.95 16 3 C -0.21 -2.20 10.97 29.03 0.32 -1.89 16 4 S 0.09 1.03 23.33 -107.50 -2.51 -1.48 16 5 C -0.24 -3.72 10.04 29.18 0.29 -3.43 16 6 C 0.13 1.80 6.55 -85.11 -0.56 1.24 16 7 N -0.66 -9.27 5.41 -10.82 -0.06 -9.33 16 8 C 0.51 9.07 7.79 -10.98 -0.09 8.98 16 9 O -0.52 -10.90 12.76 5.53 0.07 -10.83 16 10 C -0.12 -2.21 5.64 -27.88 -0.16 -2.37 16 11 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 12 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 16 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.47 6.94 -51.93 -0.36 0.11 16 22 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 23 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 24 H 0.20 3.60 5.29 -52.53 -0.28 3.32 16 25 H 0.41 4.32 7.28 -40.82 -0.30 4.02 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 29 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -32.76 269.89 -6.69 -39.46 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -3.40 Total: 0.46 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.97 Total: -13.06 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.71 Total: -36.27 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.76 -6.69 -39.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292004982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.545 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds