Wall clock time and date at job start Sun Mar 29 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33363 * 122.55429 * 2 1 4 4 S 1.75852 * 109.71237 * 180.02562 * 3 2 1 5 5 C 1.75864 * 91.04896 * 0.02562 * 4 3 2 6 6 C 1.33819 * 109.59489 * 0.02562 * 5 4 3 7 7 N 1.40721 * 122.62236 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99871 * 353.85358 * 7 6 5 9 9 O 1.21308 * 120.00208 * 5.38849 * 8 7 6 10 10 C 1.50704 * 119.99962 * 185.38377 * 8 7 6 11 11 C 1.52998 * 109.47019 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46999 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00138 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00306 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47329 * 89.99448 * 16 14 12 18 18 H 1.48500 * 109.47076 * 209.99380 * 16 14 12 19 19 H 1.48500 * 109.46940 * 329.99480 * 16 14 12 20 20 H 1.09002 * 109.46744 * 89.97634 * 1 2 3 21 21 H 1.09000 * 109.46599 * 209.96730 * 1 2 3 22 22 H 1.08993 * 109.47236 * 329.97108 * 1 2 3 23 23 H 1.08005 * 125.14250 * 359.76293 * 3 2 1 24 24 H 1.07997 * 125.20396 * 180.02562 * 5 4 3 25 25 H 0.96999 * 119.99864 * 173.86421 * 7 6 5 26 26 H 1.08997 * 109.46843 * 299.99985 * 10 8 7 27 27 H 1.08991 * 109.47230 * 60.00376 * 10 8 7 28 28 H 1.08992 * 109.47608 * 299.99952 * 11 10 8 29 29 H 1.09004 * 109.47355 * 60.00122 * 11 10 8 30 30 H 0.96995 * 120.00196 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1241 0.0000 4 16 3.9391 0.7332 -0.0007 5 6 3.5797 -0.9883 -0.0018 6 6 2.2539 -1.1699 -0.0021 7 7 1.6632 -2.4472 -0.0024 8 6 2.4336 -3.5459 -0.1274 9 8 3.6421 -3.4410 -0.1413 10 6 1.7939 -4.9049 -0.2498 11 6 2.8831 -5.9717 -0.3774 12 6 2.2433 -7.3308 -0.4991 13 1 1.1674 -7.4241 -0.4872 14 6 3.0315 -8.4548 -0.6268 15 7 2.4732 -9.6408 -0.7336 16 14 4.8923 -8.2932 -0.6482 17 1 5.4135 -8.3889 0.7389 18 1 5.4744 -9.3832 -1.4719 19 1 5.2684 -6.9792 -1.2288 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3632 -0.8903 0.5133 22 1 -0.3633 0.8897 0.5142 23 1 1.8147 2.1233 -0.0037 24 1 4.3163 -1.7781 -0.0021 25 1 0.7015 -2.5367 0.0871 26 1 1.1924 -5.1044 0.6370 27 1 1.1567 -4.9282 -1.1338 28 1 3.4850 -5.7723 -1.2639 29 1 3.5200 -5.9483 0.5069 30 1 3.0277 -10.4315 -0.8231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292004982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:08 Heat of formation + Delta-G solvation = -31.784731 kcal Electronic energy + Delta-G solvation = -14314.895244 eV Core-core repulsion = 11814.808290 eV Total energy + Delta-G solvation = -2500.086955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57820 -39.00944 -35.60247 -35.01533 -33.38372 -31.47227 -28.72708 -27.48274 -24.70413 -22.94186 -21.29013 -20.23130 -19.36454 -18.70280 -17.21201 -16.80838 -16.64122 -16.23591 -15.35422 -15.14167 -14.95324 -14.68118 -14.35202 -13.96114 -13.42431 -13.22223 -13.11177 -12.89986 -12.82319 -12.12150 -11.99457 -11.83819 -11.78730 -11.50846 -11.41097 -10.78725 -10.63390 -9.52460 -8.82117 -8.32243 -6.35200 0.06498 0.73438 1.06905 1.22251 1.32449 1.34922 1.48973 2.00947 2.15581 2.33958 3.03773 3.79174 3.94271 4.17380 4.33318 4.44862 4.50996 4.71752 4.85254 4.88750 4.92369 4.98955 5.28762 5.31918 5.34158 5.41489 5.59594 5.66744 6.22084 6.45560 6.71380 7.10718 7.30348 8.83369 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044939 B = 0.005098 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.916923 B = 5491.531063 C = 6084.626267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.127 4.127 3 C -0.194 4.194 4 S 0.103 5.897 5 C -0.284 4.284 6 C 0.118 3.882 7 N -0.643 5.643 8 C 0.512 3.488 9 O -0.556 6.556 10 C -0.112 4.112 11 C 0.004 3.996 12 C -0.529 4.529 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.943 5.943 16 Si 0.936 3.064 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.262 1.262 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.201 0.799 24 H 0.172 0.828 25 H 0.427 0.573 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 23.817 1.920 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C -0.330 4.330 4 S 0.365 5.635 5 C -0.423 4.423 6 C 0.012 3.988 7 N -0.289 5.289 8 C 0.302 3.698 9 O -0.435 6.435 10 C -0.151 4.151 11 C -0.034 4.034 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.182 4.182 15 N -0.583 5.583 16 Si 0.761 3.239 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.186 1.186 20 H 0.100 0.900 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.218 0.782 24 H 0.189 0.811 25 H 0.266 0.734 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.146 24.491 1.873 24.656 hybrid contribution -0.641 -1.520 -0.022 1.650 sum -2.787 22.971 1.851 23.213 Atomic orbital electron populations 1.20594 0.86922 1.04208 1.03557 1.18852 0.99132 0.89810 1.06323 1.25667 0.95181 1.03123 1.08991 1.84077 1.07204 0.98484 1.73725 1.26332 1.00013 1.00561 1.15354 1.17102 0.91627 0.85996 1.04075 1.43439 1.11830 1.02673 1.70949 1.21523 0.86984 0.87106 0.74200 1.90468 1.16561 1.86451 1.50035 1.21514 0.99882 0.88204 1.05534 1.19242 0.94825 0.92839 0.96517 1.21409 0.94502 0.91020 1.49735 0.92892 1.25766 1.03186 0.94975 0.94298 1.70014 1.37470 0.98929 1.51934 0.85862 0.80867 0.78262 0.78922 1.19417 1.20439 1.18605 0.89996 0.91033 0.89048 0.78234 0.81132 0.73362 0.87185 0.87279 0.97064 0.97113 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.85 71.23 0.70 -0.43 16 2 C -0.13 -2.51 5.81 -20.83 -0.12 -2.63 16 3 C -0.19 -3.41 10.97 66.72 0.73 -2.68 16 4 S 0.10 2.31 23.33 -56.49 -1.32 1.00 16 5 C -0.28 -8.78 10.04 66.81 0.67 -8.11 16 6 C 0.12 3.21 6.55 36.84 0.24 3.45 16 7 N -0.64 -17.05 5.41 -306.54 -1.66 -18.70 16 8 C 0.51 17.96 7.79 87.66 0.68 18.64 16 9 O -0.56 -23.93 12.76 -3.12 -0.04 -23.97 16 10 C -0.11 -4.04 5.64 29.85 0.17 -3.87 16 11 C 0.00 0.18 3.33 29.85 0.10 0.28 16 12 C -0.53 -29.99 9.66 25.60 0.25 -29.74 16 13 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 14 C 0.02 0.92 5.47 84.65 0.46 1.38 16 15 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 16 Si 0.94 46.47 27.47 68.60 1.88 48.35 16 17 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 20 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.07 0.77 6.94 -2.39 -0.02 0.75 16 22 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 23 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 24 H 0.17 6.42 5.29 -3.54 -0.02 6.40 16 25 H 0.43 7.93 7.28 -92.71 -0.68 7.25 16 26 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 29 H 0.01 0.53 7.53 -2.38 -0.02 0.51 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -71.96 269.89 3.48 -68.49 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.42 Total: 6.86 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.89 Total: -23.70 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.36 Total: -77.03 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.88 Total: 48.35 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.32 Total: 1.00 kcal Total: -71.96 3.48 -68.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292004982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.704 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds