Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 299.99764 * 3 2 1 6 6 H 1.48495 * 109.47316 * 59.99951 * 3 2 1 7 7 C 1.37873 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46913 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47083 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99874 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46724 * 180.02562 * 14 13 11 16 16 C 1.38425 * 122.53762 * 90.00099 * 15 14 13 17 17 C 1.33390 * 114.92123 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59251 * 0.02562 * 17 16 15 19 19 C 1.33383 * 122.54063 * 269.97373 * 15 14 13 20 20 H 0.97003 * 120.00286 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47142 * 60.00260 * 9 7 2 22 22 H 1.09003 * 109.47386 * 299.99910 * 9 7 2 23 23 H 1.08999 * 109.47326 * 59.99979 * 10 9 7 24 24 H 1.08998 * 109.46785 * 299.99456 * 10 9 7 25 25 H 0.97000 * 119.99911 * 0.02562 * 13 11 10 26 26 H 1.08999 * 109.47237 * 60.00275 * 14 13 11 27 27 H 1.09003 * 109.47393 * 299.99862 * 14 13 11 28 28 H 1.07997 * 122.54292 * 359.71157 * 16 15 14 29 29 H 1.08003 * 125.20243 * 179.97438 * 17 16 15 30 30 H 1.08000 * 125.20529 * 0.06732 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 6 1.4331 -7.4031 -0.0019 15 6 2.4124 -8.5485 -0.0020 16 6 2.8963 -9.1145 1.1649 17 6 3.7551 -10.1197 0.9880 18 16 3.9924 -10.3968 -0.7326 19 6 2.8782 -9.0941 -1.1265 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8718 -3.6043 -0.8906 25 1 3.1356 -6.1344 -0.0015 26 1 0.8061 -7.4606 -0.8916 27 1 0.8068 -7.4611 0.8884 28 1 2.6041 -8.7657 2.1444 29 1 4.2324 -10.6775 1.7802 30 1 2.6128 -8.7828 -2.1260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292500749.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -18.324490 kcal Electronic energy + Delta-G solvation = -13894.105018 eV Core-core repulsion = 11394.601743 eV Total energy + Delta-G solvation = -2499.503275 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40560 -38.13127 -34.08577 -33.41900 -31.08843 -30.01665 -27.17926 -25.26433 -23.08482 -21.46711 -19.76100 -18.95171 -17.90532 -16.82795 -15.96315 -15.59685 -15.11723 -14.78380 -14.39514 -13.53153 -13.27901 -13.23265 -12.88862 -12.51194 -12.23088 -12.11693 -11.78074 -11.13752 -11.00791 -10.92864 -10.56435 -9.93742 -9.64946 -9.30267 -9.08743 -8.98348 -8.76293 -8.61676 -8.30498 -5.94482 -3.98730 0.72452 1.39262 1.71115 2.34555 3.28460 3.33816 3.40776 3.44177 3.80628 4.49396 4.63680 4.76529 5.13555 5.21262 5.40514 5.45545 5.54638 5.77705 5.87088 6.13717 6.23602 6.27417 6.27840 6.72378 6.92278 7.76755 7.88724 7.92271 8.09291 8.40825 8.80565 9.10243 9.64784 11.16521 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059272 B = 0.003723 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.281810 B = 7519.682690 C = 7730.877508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.740 5.740 14 C 0.179 3.821 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.214 4.214 18 S 0.093 5.907 19 C -0.192 4.192 20 H 0.260 0.740 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.398 0.602 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -21.065 0.008 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.395 5.395 14 C 0.053 3.947 15 C -0.131 4.131 16 C -0.152 4.152 17 C -0.350 4.350 18 S 0.357 5.643 19 C -0.328 4.328 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.232 0.768 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.182 0.818 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.969 -21.973 -0.839 23.748 hybrid contribution 0.118 1.782 0.838 1.973 sum 9.087 -20.191 -0.001 22.141 Atomic orbital electron populations 1.70010 1.06052 1.26446 1.50346 1.25029 0.94827 0.99238 0.95343 0.86535 0.80009 0.83848 0.77570 1.19752 1.21033 1.21025 1.21267 0.92975 0.91021 1.51179 0.92552 1.18911 0.93202 0.89393 0.98644 1.21866 1.00703 0.91872 1.02494 1.21594 0.88653 0.85579 0.74393 1.90672 1.14470 1.87612 1.48313 1.46269 1.10132 1.05043 1.78023 1.19805 0.91863 0.80134 1.02911 1.19058 1.01673 1.00107 0.92292 1.20157 0.98527 0.96904 0.99603 1.25606 1.06000 1.04396 0.98959 1.84303 1.44528 1.34484 1.00999 1.25636 1.03245 1.01221 1.02705 0.93021 0.95802 0.95801 0.90237 0.90264 0.76829 0.90961 0.90830 0.83919 0.81782 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 11 C 0.51 9.89 7.83 -10.98 -0.09 9.80 16 12 O -0.54 -12.74 15.98 5.56 0.09 -12.66 16 13 N -0.74 -10.58 5.55 -61.47 -0.34 -10.92 16 14 C 0.18 2.28 5.92 -5.19 -0.03 2.25 16 15 C -0.12 -1.23 5.17 -106.25 -0.55 -1.78 16 16 C -0.12 -1.14 9.98 -41.21 -0.41 -1.55 16 17 C -0.21 -1.75 11.23 29.04 0.33 -1.42 16 18 S 0.09 0.76 23.34 -107.50 -2.51 -1.75 16 19 C -0.19 -1.79 10.98 29.04 0.32 -1.48 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 24 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.40 4.70 8.46 -40.82 -0.35 4.35 16 26 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 27 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 30 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 282.01 15.07 4.25 4.25 Total: -1.00 -33.69 282.01 -7.60 -41.29 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.69 Total: -0.19 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.12 Total: -9.91 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.40 Total: -37.79 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.69 -7.60 -41.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292500749.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.966 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds