Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 299.99764 * 3 2 1 6 6 H 1.48495 * 109.47316 * 59.99951 * 3 2 1 7 7 C 1.37873 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46913 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47083 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99874 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46724 * 180.02562 * 14 13 11 16 16 C 1.38425 * 122.53762 * 90.00099 * 15 14 13 17 17 C 1.33390 * 114.92123 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59251 * 0.02562 * 17 16 15 19 19 C 1.33383 * 122.54063 * 269.97373 * 15 14 13 20 20 H 0.97003 * 120.00286 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47142 * 60.00260 * 9 7 2 22 22 H 1.09003 * 109.47386 * 299.99910 * 9 7 2 23 23 H 1.08999 * 109.47326 * 59.99979 * 10 9 7 24 24 H 1.08998 * 109.46785 * 299.99456 * 10 9 7 25 25 H 0.97000 * 119.99911 * 0.02562 * 13 11 10 26 26 H 1.08999 * 109.47237 * 60.00275 * 14 13 11 27 27 H 1.09003 * 109.47393 * 299.99862 * 14 13 11 28 28 H 1.07997 * 122.54292 * 359.71157 * 16 15 14 29 29 H 1.08003 * 125.20243 * 179.97438 * 17 16 15 30 30 H 1.08000 * 125.20529 * 0.06732 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 6 1.4331 -7.4031 -0.0019 15 6 2.4124 -8.5485 -0.0020 16 6 2.8963 -9.1145 1.1649 17 6 3.7551 -10.1197 0.9880 18 16 3.9924 -10.3968 -0.7326 19 6 2.8782 -9.0941 -1.1265 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8718 -3.6043 -0.8906 25 1 3.1356 -6.1344 -0.0015 26 1 0.8061 -7.4606 -0.8916 27 1 0.8068 -7.4611 0.8884 28 1 2.6041 -8.7657 2.1444 29 1 4.2324 -10.6775 1.7802 30 1 2.6128 -8.7828 -2.1260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292500749.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -41.407362 kcal Electronic energy + Delta-G solvation = -13895.105967 eV Core-core repulsion = 11394.601743 eV Total energy + Delta-G solvation = -2500.504223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78418 -39.11825 -35.62009 -35.30905 -33.02394 -30.95764 -28.52029 -26.95958 -24.10521 -23.20179 -21.26712 -19.79254 -18.87659 -18.53286 -17.42724 -17.05257 -16.56913 -16.39462 -15.84478 -14.81501 -14.69480 -14.22433 -13.95561 -13.89544 -13.72080 -13.22456 -13.03387 -12.96331 -12.81243 -12.43259 -11.91351 -11.71309 -11.62208 -11.27552 -10.82144 -10.56968 -10.08789 -9.76612 -9.36338 -8.17072 -6.31052 0.02522 0.72339 1.03400 1.43128 1.44623 1.54838 1.58134 1.72310 2.40902 2.57887 3.15990 3.82835 4.00899 4.12488 4.31113 4.51020 4.55484 4.58289 4.66303 4.76790 5.07674 5.10555 5.38560 5.44792 5.49945 5.52834 5.64848 5.86906 6.18962 6.61352 6.87741 7.34409 7.39377 8.95839 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059272 B = 0.003723 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.281810 B = 7519.682690 C = 7730.877508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.119 4.119 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.714 5.714 14 C 0.181 3.819 15 C -0.128 4.128 16 C -0.138 4.138 17 C -0.210 4.210 18 S 0.124 5.876 19 C -0.199 4.199 20 H 0.263 0.737 21 H -0.017 1.017 22 H -0.017 1.017 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.414 0.586 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.188 0.812 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.026 -21.859 0.035 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.367 5.367 14 C 0.055 3.945 15 C -0.141 4.141 16 C -0.168 4.168 17 C -0.345 4.345 18 S 0.388 5.612 19 C -0.336 4.336 20 H 0.071 0.929 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.251 0.749 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.205 0.795 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.914 -22.820 -0.812 25.756 hybrid contribution -0.761 1.898 0.812 2.200 sum 11.153 -20.923 0.000 23.710 Atomic orbital electron populations 1.70186 1.08314 1.27734 1.51578 1.26146 0.95736 1.03971 0.94670 0.85260 0.79292 0.78060 0.77542 1.17611 1.20643 1.20623 1.21751 0.94013 0.91617 1.50618 0.90597 1.18708 0.93754 0.92480 0.94774 1.21637 0.99310 0.90059 1.04850 1.21347 0.87796 0.86670 0.74173 1.90658 1.16658 1.88372 1.51240 1.45979 1.10898 1.04300 1.75547 1.19807 0.92410 0.80054 1.02238 1.18842 1.02090 0.99878 0.93292 1.20221 0.99363 0.97719 0.99496 1.25931 1.05130 1.03731 0.99752 1.84258 1.43142 1.33082 1.00730 1.25833 1.03301 1.01584 1.02866 0.92866 0.99873 0.99874 0.87763 0.87783 0.74890 0.91664 0.91598 0.83489 0.79473 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.91 13.29 21.45 0.28 -59.62 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.28 4.26 29.85 0.13 2.41 16 10 C -0.12 -4.81 5.64 29.85 0.17 -4.64 16 11 C 0.51 19.99 7.83 87.66 0.69 20.68 16 12 O -0.59 -29.26 15.98 -3.04 -0.05 -29.31 16 13 N -0.71 -19.68 5.55 -466.78 -2.59 -22.27 16 14 C 0.18 4.53 5.92 85.63 0.51 5.03 16 15 C -0.13 -2.46 5.17 -20.92 -0.11 -2.57 16 16 C -0.14 -2.33 9.98 21.22 0.21 -2.11 16 17 C -0.21 -2.85 11.23 66.72 0.75 -2.10 16 18 S 0.12 1.69 23.34 -56.49 -1.32 0.37 16 19 C -0.20 -3.35 10.98 66.72 0.73 -2.62 16 20 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 21 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 22 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 23 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 24 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 25 H 0.41 8.85 8.46 -92.71 -0.78 8.06 16 26 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 27 H 0.07 1.77 8.13 -2.39 -0.02 1.76 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 29 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -75.33 282.01 2.48 -72.85 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.36 Total: 8.22 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.77 Total: -16.76 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.30 Total: -81.90 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.32 Total: 0.37 kcal Total: -75.33 2.48 -72.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292500749.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.442 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds