Wall clock time and date at job start Sun Mar 29 2020 22:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00333 * 2 1 4 4 N 1.46898 * 109.47517 * 124.13906 * 3 2 1 5 5 C 1.46898 * 110.99889 * 299.99439 * 4 3 2 6 6 C 1.50703 * 109.46894 * 288.17125 * 5 4 3 7 7 H 1.07997 * 120.00009 * 354.74786 * 6 5 4 8 8 C 1.37875 * 119.99769 * 174.73894 * 6 5 4 9 9 N 1.31514 * 120.00310 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99801 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47199 * 60.00412 * 10 8 6 12 12 H 1.48506 * 109.47068 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47235 * 300.00352 * 10 8 6 14 14 C 1.46907 * 110.99729 * 63.94498 * 4 3 2 15 15 C 1.50691 * 109.47126 * 66.04889 * 14 4 3 16 16 C 1.35349 * 123.76879 * 95.00040 * 15 14 4 17 17 S 1.72120 * 104.15360 * 179.97438 * 16 15 14 18 18 N 1.56515 * 95.88542 * 359.97438 * 17 16 15 19 19 N 1.27575 * 109.22228 * 0.02562 * 18 17 16 20 20 H 1.07997 * 120.00349 * 180.02562 * 1 2 3 21 21 H 1.08000 * 119.99339 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.99339 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47133 * 4.13948 * 3 2 1 24 24 H 1.08998 * 109.46856 * 244.14188 * 3 2 1 25 25 H 1.09000 * 109.47702 * 48.17053 * 5 4 3 26 26 H 1.09001 * 109.47363 * 168.17403 * 5 4 3 27 27 H 0.96998 * 120.00010 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.47105 * 306.04508 * 14 4 3 29 29 H 1.08999 * 109.46766 * 186.05280 * 14 4 3 30 30 H 1.07993 * 127.92402 * 359.93620 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9816 1.3405 1.1463 5 6 2.2471 1.2209 2.4128 6 6 1.4923 2.4980 2.6783 7 1 1.6186 3.3463 2.0219 8 6 0.6405 2.5834 3.7590 9 7 0.4870 1.5505 4.5586 10 14 -0.2956 4.1661 4.0877 11 1 -1.1615 4.4801 2.9228 12 1 -1.1370 4.0010 5.3002 13 1 0.6678 5.2757 4.3016 14 6 4.0073 0.2951 1.0318 15 6 4.8962 0.5906 -0.1486 16 6 6.0730 1.2529 -0.0570 17 16 6.6533 1.3058 -1.6766 18 7 5.4440 0.5366 -2.3056 19 7 4.6150 0.2323 -1.3848 20 1 -0.5400 -0.9352 0.0004 21 1 -0.5399 0.9354 -0.0004 22 1 1.8499 -0.9354 0.0004 23 1 1.3577 2.1322 0.0742 24 1 2.6334 1.3955 -0.9248 25 1 1.5443 0.3902 2.3483 26 1 2.9507 1.0392 3.2252 27 1 -0.1120 1.6108 5.3191 28 1 3.5257 -0.6726 0.8908 29 1 4.6069 0.2732 1.9418 30 1 6.5405 1.6562 0.8290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292844580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:31 Heat of formation + Delta-G solvation = 100.922779 kcal Electronic energy + Delta-G solvation = -14790.608510 eV Core-core repulsion = 12328.568936 eV Total energy + Delta-G solvation = -2462.039574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76948 -37.29305 -32.97504 -32.79815 -31.30524 -27.70715 -26.63080 -26.26884 -23.81799 -21.18275 -20.77642 -19.16439 -17.83413 -16.25523 -15.82974 -15.61254 -14.98788 -14.48552 -14.18472 -13.84652 -13.63014 -12.58897 -12.20597 -12.15032 -11.79014 -11.25552 -11.18126 -10.95209 -10.74010 -10.61183 -10.46978 -10.03138 -9.97665 -9.71844 -9.51352 -9.27573 -8.63120 -8.41240 -7.32621 -6.02221 -4.03226 0.39107 1.25232 1.82872 2.40670 2.99330 3.33202 3.37407 3.40317 4.24268 4.43356 5.02949 5.12044 5.22302 5.33363 5.62240 5.63079 5.78525 6.03571 6.06433 6.23389 6.51448 6.72232 7.16533 7.26366 7.35658 7.47401 7.78912 7.93609 8.03127 8.15086 8.49832 9.03838 9.60522 11.08269 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.033326 B = 0.006296 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.994482 B = 4446.261089 C = 4826.666208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C 0.090 3.910 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.128 3.872 15 C 0.047 3.953 16 C -0.271 4.271 17 S 0.387 5.613 18 N -0.294 5.294 19 N -0.230 5.230 20 H 0.085 0.915 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 -1.620 -8.752 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C -0.038 4.038 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.004 4.004 15 C -0.097 4.097 16 C -0.428 4.428 17 S 0.522 5.478 18 N -0.272 5.272 19 N -0.099 5.099 20 H 0.103 0.897 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.885 -1.399 -10.482 15.176 hybrid contribution -1.433 0.032 1.928 2.402 sum 9.452 -1.368 -8.554 12.821 Atomic orbital electron populations 1.23671 0.96019 1.01041 1.01262 1.23446 0.96540 0.99691 0.99500 1.21253 0.94595 0.94544 0.93446 1.62480 1.14275 1.43272 1.04851 1.19804 0.92300 0.97538 0.83720 1.21050 1.24010 0.98441 1.10733 0.92071 1.24946 0.96842 0.96476 0.96142 1.69940 1.37930 1.29798 1.16074 0.86599 0.79807 0.83688 0.77531 1.20313 1.21382 1.20243 1.20571 0.93157 0.95372 0.91294 1.22487 0.95235 0.98124 0.93881 1.28092 1.01175 1.07664 1.05912 1.81279 1.27549 1.43596 0.95347 1.78924 1.04484 1.18194 1.25645 1.71220 1.21772 1.18844 0.98067 0.89679 0.88610 0.88467 0.89922 0.91708 0.97187 0.95738 0.92910 0.93018 0.89035 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 14.32 29.01 0.42 -2.98 16 2 C -0.17 -3.32 7.43 -36.03 -0.27 -3.59 16 3 C 0.09 1.81 5.47 -4.98 -0.03 1.79 16 4 N -0.53 -11.03 4.65 -238.97 -1.11 -12.14 16 5 C 0.19 4.78 4.59 -4.98 -0.02 4.75 16 6 C -0.50 -13.82 8.52 -34.44 -0.29 -14.11 16 7 H 0.06 1.68 7.66 -52.49 -0.40 1.28 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.13 2.24 5.28 -4.98 -0.03 2.21 16 15 C 0.05 0.74 5.69 -83.66 -0.48 0.26 16 16 C -0.27 -3.40 11.35 29.70 0.34 -3.07 16 17 S 0.39 4.32 23.40 -107.50 -2.52 1.80 16 18 N -0.29 -4.48 12.54 60.35 0.76 -3.73 16 19 N -0.23 -3.89 10.43 32.45 0.34 -3.55 16 20 H 0.08 1.42 8.06 -52.49 -0.42 1.00 16 21 H 0.10 1.82 7.84 -52.49 -0.41 1.41 16 22 H 0.10 1.80 6.79 -52.49 -0.36 1.45 16 23 H 0.08 1.80 7.03 -51.93 -0.37 1.44 16 24 H 0.06 1.27 6.25 -51.93 -0.32 0.95 16 25 H 0.01 0.28 6.72 -51.93 -0.35 -0.07 16 26 H 0.02 0.64 7.81 -51.93 -0.41 0.24 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.05 0.91 6.33 -51.93 -0.33 0.58 16 29 H 0.09 1.47 7.84 -51.93 -0.41 1.06 16 30 H 0.20 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 271.96 15.07 4.10 4.10 Total: -1.00 -30.24 271.96 -6.51 -36.75 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -3.33 Total: -0.99 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.46 Total: -13.24 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.72 Total: -44.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.52 Total: 1.80 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.24 -6.51 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292844580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.672 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds