Wall clock time and date at job start Sun Mar 29 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70439 * 124.59164 * 2 1 4 4 C 1.75503 * 92.44721 * 179.97438 * 3 2 1 5 5 C 1.32777 * 110.57411 * 359.74063 * 4 3 2 6 6 C 1.36013 * 124.59069 * 179.97438 * 2 1 3 7 7 C 1.47186 * 123.45913 * 359.97438 * 6 2 1 8 8 O 1.21639 * 120.00586 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99820 * 179.97438 * 7 6 2 10 10 C 1.46506 * 120.00033 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47060 * 35.00669 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00400 * 10 9 7 13 13 C 1.50701 * 109.46956 * 155.00290 * 10 9 7 14 14 H 1.08001 * 120.00213 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99755 * 180.02562 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99825 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.46734 * 90.00109 * 17 15 13 19 19 H 1.48499 * 109.47268 * 210.00057 * 17 15 13 20 20 H 1.48498 * 109.47211 * 330.00316 * 17 15 13 21 21 H 1.09002 * 109.47200 * 270.00148 * 1 2 3 22 22 H 1.08999 * 109.46904 * 30.00293 * 1 2 3 23 23 H 1.09000 * 109.46765 * 149.99907 * 1 2 3 24 24 H 1.08001 * 124.71749 * 179.97438 * 4 3 2 25 25 H 1.07996 * 123.46225 * 180.22918 * 5 4 3 26 26 H 0.97000 * 120.00155 * 0.02562 * 9 7 6 27 27 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 28 28 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 30 30 H 0.97003 * 119.99339 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 0.0008 5 6 3.6943 -0.8315 0.0066 6 6 2.2792 -1.1197 0.0005 7 6 1.7290 -2.4849 0.0017 8 8 0.5246 -2.6553 0.0027 9 7 2.5597 -3.5462 0.0016 10 6 2.0121 -4.9050 0.0033 11 1 1.0949 -4.9279 -0.5852 12 6 1.7064 -5.3299 1.4410 13 6 3.0181 -5.8527 -0.5975 14 1 3.9700 -5.4801 -0.9461 15 6 2.7229 -7.1954 -0.7030 16 7 1.5637 -7.6491 -0.2789 17 14 3.9696 -8.3700 -1.4484 18 1 4.8503 -8.9020 -0.3774 19 1 3.2579 -9.4942 -2.1079 20 1 4.7917 -7.6477 -2.4521 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 4.9538 0.8937 0.0006 25 1 4.4576 -1.5955 0.0118 26 1 3.5202 -3.4103 0.0011 27 1 2.6237 -5.3071 2.0294 28 1 0.9789 -4.6445 1.8754 29 1 1.2995 -6.3411 1.4422 30 1 1.3559 -8.5937 -0.3535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294766130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:31 Heat of formation + Delta-G solvation = -17.661473 kcal Electronic energy + Delta-G solvation = -14661.293075 eV Core-core repulsion = 12161.818550 eV Total energy + Delta-G solvation = -2499.474524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.28095 -36.63815 -34.79657 -32.46981 -31.61623 -29.17563 -26.65574 -25.23712 -23.49915 -21.57603 -20.21469 -18.85476 -17.10648 -16.81027 -15.58126 -15.16418 -14.56679 -14.46294 -13.68698 -13.33684 -13.18546 -12.84583 -12.46751 -12.35299 -11.97326 -11.66720 -11.39842 -11.10205 -10.94890 -10.92728 -10.71120 -10.30017 -10.22530 -9.03515 -8.96840 -8.67000 -8.54693 -8.35307 -7.83125 -6.11527 -4.20683 0.99130 1.60802 1.99928 2.26164 3.24893 3.31702 3.34071 4.02633 4.21068 4.44838 4.82595 5.14957 5.20881 5.37049 5.54233 5.71389 5.81824 6.09452 6.13955 6.42083 6.49937 6.85125 6.99473 7.16745 7.48185 7.58716 7.71353 7.93433 8.16076 8.69059 8.79469 9.14702 9.46943 10.94524 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042518 B = 0.005768 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.385286 B = 4853.386182 C = 5292.706817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.144 4.144 3 S 0.147 5.853 4 C -0.239 4.239 5 C -0.101 4.101 6 C -0.164 4.164 7 C 0.563 3.437 8 O -0.551 6.551 9 N -0.701 5.701 10 C 0.264 3.736 11 H 0.050 0.950 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.107 0.893 24 H 0.165 0.835 25 H 0.149 0.851 26 H 0.388 0.612 27 H 0.026 0.974 28 H 0.015 0.985 29 H 0.090 0.910 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.706 15.290 1.047 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.264 4.264 3 S 0.411 5.589 4 C -0.373 4.373 5 C -0.130 4.130 6 C -0.180 4.180 7 C 0.348 3.652 8 O -0.432 6.432 9 N -0.348 5.348 10 C 0.163 3.837 11 H 0.068 0.932 12 C -0.205 4.205 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.126 0.874 24 H 0.183 0.817 25 H 0.166 0.834 26 H 0.221 0.779 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.456 16.472 1.057 16.687 hybrid contribution 1.634 -2.174 -0.331 2.740 sum 4.090 14.298 0.726 14.889 Atomic orbital electron populations 1.20617 0.86921 1.04195 1.03391 1.24450 1.01670 0.96426 1.03882 1.82831 0.95642 1.08388 1.71989 1.25298 1.01831 0.97171 1.13044 1.21324 0.95007 0.96261 1.00445 1.20534 0.92526 0.94873 1.10098 1.17549 0.86598 0.83560 0.77505 1.90672 1.14539 1.86045 1.51957 1.46424 1.09042 1.07599 1.71707 1.18767 0.95520 0.75417 0.94025 0.93241 1.22076 0.98209 1.02908 0.97337 1.21218 1.02094 0.92514 1.41375 0.92103 1.24885 0.95552 0.98077 0.95180 1.69904 1.21404 1.14869 1.45910 0.86445 0.80974 0.80403 0.79263 1.20539 1.21050 1.19865 0.90517 0.92077 0.87428 0.81744 0.83368 0.77942 0.95496 0.96594 0.89121 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.60 36.01 0.35 -0.99 16 2 C -0.14 -2.19 6.34 -35.11 -0.22 -2.41 16 3 S 0.15 1.69 22.97 -107.50 -2.47 -0.78 16 4 C -0.24 -2.76 11.12 28.86 0.32 -2.44 16 5 C -0.10 -1.40 9.91 -39.02 -0.39 -1.78 16 6 C -0.16 -2.80 5.98 -104.63 -0.63 -3.43 16 7 C 0.56 11.96 7.75 -12.63 -0.10 11.87 16 8 O -0.55 -13.30 13.72 5.24 0.07 -13.23 16 9 N -0.70 -15.20 5.05 -56.08 -0.28 -15.48 16 10 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 11 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 12 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 13 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.11 1.85 5.94 -51.93 -0.31 1.54 16 24 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 25 H 0.15 1.81 7.10 -52.49 -0.37 1.44 16 26 H 0.39 7.32 7.08 -40.82 -0.29 7.03 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -30.32 270.91 -7.22 -37.54 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.33 Total: 5.33 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.89 Total: -8.76 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.34 Total: -39.87 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.32 -7.22 -37.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.874 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds