Wall clock time and date at job start Sun Mar 29 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70439 * 124.59164 * 2 1 4 4 C 1.75503 * 92.44721 * 179.97438 * 3 2 1 5 5 C 1.32777 * 110.57411 * 359.74063 * 4 3 2 6 6 C 1.36013 * 124.59069 * 179.97438 * 2 1 3 7 7 C 1.47186 * 123.45913 * 359.97438 * 6 2 1 8 8 O 1.21639 * 120.00586 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99820 * 179.97438 * 7 6 2 10 10 C 1.46506 * 120.00033 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47060 * 35.00669 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00400 * 10 9 7 13 13 C 1.50701 * 109.46956 * 155.00290 * 10 9 7 14 14 H 1.08001 * 120.00213 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99755 * 180.02562 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99825 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.46734 * 90.00109 * 17 15 13 19 19 H 1.48499 * 109.47268 * 210.00057 * 17 15 13 20 20 H 1.48498 * 109.47211 * 330.00316 * 17 15 13 21 21 H 1.09002 * 109.47200 * 270.00148 * 1 2 3 22 22 H 1.08999 * 109.46904 * 30.00293 * 1 2 3 23 23 H 1.09000 * 109.46765 * 149.99907 * 1 2 3 24 24 H 1.08001 * 124.71749 * 179.97438 * 4 3 2 25 25 H 1.07996 * 123.46225 * 180.22918 * 5 4 3 26 26 H 0.97000 * 120.00155 * 0.02562 * 9 7 6 27 27 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 28 28 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 30 30 H 0.97003 * 119.99339 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 0.0008 5 6 3.6943 -0.8315 0.0066 6 6 2.2792 -1.1197 0.0005 7 6 1.7290 -2.4849 0.0017 8 8 0.5246 -2.6553 0.0027 9 7 2.5597 -3.5462 0.0016 10 6 2.0121 -4.9050 0.0033 11 1 1.0949 -4.9279 -0.5852 12 6 1.7064 -5.3299 1.4410 13 6 3.0181 -5.8527 -0.5975 14 1 3.9700 -5.4801 -0.9461 15 6 2.7229 -7.1954 -0.7030 16 7 1.5637 -7.6491 -0.2789 17 14 3.9696 -8.3700 -1.4484 18 1 4.8503 -8.9020 -0.3774 19 1 3.2579 -9.4942 -2.1079 20 1 4.7917 -7.6477 -2.4521 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 4.9538 0.8937 0.0006 25 1 4.4576 -1.5955 0.0118 26 1 3.5202 -3.4103 0.0011 27 1 2.6237 -5.3071 2.0294 28 1 0.9789 -4.6445 1.8754 29 1 1.2995 -6.3411 1.4422 30 1 1.3559 -8.5937 -0.3535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294766130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:31 Heat of formation + Delta-G solvation = -37.442130 kcal Electronic energy + Delta-G solvation = -14662.150828 eV Core-core repulsion = 12161.818550 eV Total energy + Delta-G solvation = -2500.332278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84440 -37.95732 -36.68403 -34.37795 -32.78848 -31.09264 -27.94353 -27.33639 -24.84161 -22.97560 -21.95908 -20.45124 -18.58748 -18.13577 -17.31700 -16.85331 -16.25659 -15.97689 -15.18323 -14.68277 -14.50919 -14.31211 -14.21364 -13.70525 -13.55121 -13.04707 -12.99630 -12.84629 -12.71767 -12.52404 -12.28955 -12.13695 -11.95454 -11.11900 -10.68341 -10.55475 -9.88481 -9.64706 -9.27682 -8.18343 -6.36208 -0.14495 0.59916 0.98657 1.09373 1.44698 1.45767 1.56456 2.36341 2.48738 2.72889 3.12121 3.78431 3.98512 4.21946 4.44000 4.65635 4.67756 4.73048 4.90064 5.01345 5.07760 5.09577 5.27602 5.34842 5.44831 5.61033 5.67966 5.90462 6.08249 6.70856 6.95853 7.30844 7.52873 8.88259 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042518 B = 0.005768 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.385286 B = 4853.386182 C = 5292.706817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.166 4.166 3 S 0.231 5.769 4 C -0.226 4.226 5 C -0.120 4.120 6 C -0.196 4.196 7 C 0.557 3.443 8 O -0.592 6.592 9 N -0.699 5.699 10 C 0.271 3.729 11 H -0.001 1.001 12 C -0.132 4.132 13 C -0.548 4.548 14 H 0.073 0.927 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.264 1.264 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.203 0.797 25 H 0.159 0.841 26 H 0.402 0.598 27 H 0.039 0.961 28 H 0.011 0.989 29 H 0.068 0.932 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 17.349 0.827 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.286 4.286 3 S 0.496 5.504 4 C -0.360 4.360 5 C -0.148 4.148 6 C -0.213 4.213 7 C 0.344 3.656 8 O -0.476 6.476 9 N -0.347 5.347 10 C 0.168 3.832 11 H 0.017 0.983 12 C -0.191 4.191 13 C -0.586 4.586 14 H 0.091 0.909 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.189 1.189 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.090 0.910 24 H 0.220 0.780 25 H 0.177 0.823 26 H 0.238 0.762 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.984 18.569 0.841 19.244 hybrid contribution 0.802 -2.648 -0.259 2.779 sum 5.786 15.921 0.583 16.950 Atomic orbital electron populations 1.20568 0.87150 1.03951 1.03455 1.24788 1.02431 0.98300 1.03109 1.82564 0.93778 1.04789 1.69265 1.25798 1.03775 0.96339 1.10124 1.21339 0.93426 0.97826 1.02244 1.20339 0.94650 0.92616 1.13743 1.18249 0.86056 0.85179 0.76091 1.90648 1.16364 1.87010 1.53599 1.46162 1.09906 1.06349 1.72287 1.18372 0.93784 0.77769 0.93318 0.98309 1.21892 0.98449 1.01375 0.97407 1.21529 1.02515 0.92994 1.41589 0.90928 1.25823 0.97437 0.99881 0.95434 1.70056 1.23365 1.15300 1.46861 0.85302 0.78377 0.77784 0.78610 1.19499 1.21130 1.18853 0.90298 0.88974 0.91040 0.77965 0.82337 0.76214 0.94144 0.97034 0.91296 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.60 71.24 0.68 -1.98 16 2 C -0.17 -4.82 6.34 25.17 0.16 -4.66 16 3 S 0.23 4.41 22.97 -56.49 -1.30 3.12 16 4 C -0.23 -4.26 11.12 66.64 0.74 -3.52 16 5 C -0.12 -3.06 9.91 22.67 0.22 -2.84 16 6 C -0.20 -6.65 5.98 -19.87 -0.12 -6.77 16 7 C 0.56 24.58 7.75 86.59 0.67 25.25 16 8 O -0.59 -30.45 13.72 -4.15 -0.06 -30.51 16 9 N -0.70 -31.20 5.05 -449.58 -2.27 -33.47 16 10 C 0.27 14.62 2.56 44.24 0.11 14.74 16 11 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 12 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 13 C -0.55 -29.71 8.73 25.60 0.22 -29.49 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C 0.01 0.78 5.30 84.66 0.45 1.23 16 16 N -0.92 -53.36 11.32 21.45 0.24 -53.11 16 17 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 2.60 5.94 -2.39 -0.01 2.58 16 24 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.16 3.56 7.10 -2.91 -0.02 3.54 16 26 H 0.40 15.26 7.08 -92.71 -0.66 14.60 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 30 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -68.55 270.91 2.96 -65.59 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.50 Total: 18.32 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.81 Total: -14.33 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.03 Total: -86.59 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.06 Total: -30.51 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.30 Total: 3.12 kcal Total: -68.55 2.96 -65.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.148 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds