Wall clock time and date at job start Sun Mar 29 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70449 * 124.58953 * 2 1 4 4 C 1.75507 * 92.44645 * 179.97438 * 3 2 1 5 5 C 1.32775 * 110.57539 * 359.71636 * 4 3 2 6 6 C 1.36009 * 124.59735 * 179.97438 * 2 1 3 7 7 C 1.47196 * 123.45550 * 0.02562 * 6 2 1 8 8 O 1.21632 * 119.99845 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99850 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47135 * 325.00366 * 10 9 7 12 12 C 1.53000 * 109.47129 * 85.00009 * 10 9 7 13 13 C 1.50698 * 109.47526 * 205.00423 * 10 9 7 14 14 H 1.08001 * 119.99810 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99883 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00532 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99970 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47303 * 59.99495 * 17 15 13 19 19 H 1.48496 * 109.47492 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46858 * 300.00028 * 17 15 13 21 21 H 1.08997 * 109.47531 * 269.99930 * 1 2 3 22 22 H 1.08998 * 109.47334 * 30.00603 * 1 2 3 23 23 H 1.09003 * 109.46798 * 149.99976 * 1 2 3 24 24 H 1.07997 * 124.71155 * 179.97438 * 4 3 2 25 25 H 1.07998 * 123.45831 * 180.28337 * 5 4 3 26 26 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 27 27 H 1.08992 * 109.47302 * 180.02562 * 12 10 9 28 28 H 1.09006 * 109.47229 * 300.00705 * 12 10 9 29 29 H 1.09002 * 109.46821 * 60.00164 * 12 10 9 30 30 H 0.97005 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0008 5 6 3.6944 -0.8313 0.0072 6 6 2.2792 -1.1196 0.0005 7 6 1.7291 -2.4849 0.0006 8 8 0.5247 -2.6552 -0.0003 9 7 2.5598 -3.5461 0.0006 10 6 2.0124 -4.9050 0.0012 11 1 1.0960 -4.9272 0.5910 12 6 1.7047 -5.3315 -1.4356 13 6 3.0192 -5.8520 0.6016 14 1 3.9715 -5.4788 0.9485 15 6 2.7246 -7.1946 0.7081 16 7 1.5648 -7.6489 0.2862 17 14 3.9723 -8.3684 1.4530 18 1 4.2700 -7.9547 2.8478 19 1 3.4175 -9.7458 1.4535 20 1 5.2215 -8.3377 0.6504 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 4.9537 0.8939 0.0006 25 1 4.4577 -1.5953 0.0133 26 1 3.5203 -3.4102 0.0009 27 1 1.2969 -6.3422 -1.4351 28 1 0.9764 -4.6464 -1.8699 29 1 2.6211 -5.3092 -2.0253 30 1 1.3574 -8.5935 0.3614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294766132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:32 Heat of formation + Delta-G solvation = -17.599301 kcal Electronic energy + Delta-G solvation = -14661.326305 eV Core-core repulsion = 12161.854476 eV Total energy + Delta-G solvation = -2499.471828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.28154 -36.63822 -34.79708 -32.46921 -31.61665 -29.17507 -26.65478 -25.23646 -23.49919 -21.57580 -20.21201 -18.85645 -17.10648 -16.81049 -15.57806 -15.16259 -14.56588 -14.46369 -13.71315 -13.24899 -13.18219 -12.93906 -12.46785 -12.34017 -11.94983 -11.67145 -11.39554 -11.09902 -10.95818 -10.93234 -10.70096 -10.31168 -10.21975 -9.04726 -8.96715 -8.67187 -8.53260 -8.35233 -7.83583 -6.11205 -4.20551 0.99173 1.60817 1.99921 2.26213 3.26317 3.31506 3.32782 4.02617 4.21047 4.44945 4.82600 5.14935 5.21036 5.37063 5.54245 5.71330 5.82192 6.09455 6.14001 6.42105 6.49655 6.85179 6.99390 7.16721 7.48238 7.58627 7.71387 7.93422 8.16192 8.69047 8.79419 9.14704 9.47038 10.94774 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.005769 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.491802 B = 4852.608586 C = 5293.035223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.144 4.144 3 S 0.147 5.853 4 C -0.239 4.239 5 C -0.101 4.101 6 C -0.164 4.164 7 C 0.563 3.437 8 O -0.551 6.551 9 N -0.701 5.701 10 C 0.265 3.735 11 H 0.050 0.950 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.077 0.923 22 H 0.060 0.940 23 H 0.107 0.893 24 H 0.165 0.835 25 H 0.149 0.851 26 H 0.388 0.612 27 H 0.090 0.910 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 15.272 -1.121 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.264 4.264 3 S 0.411 5.589 4 C -0.373 4.373 5 C -0.130 4.130 6 C -0.180 4.180 7 C 0.348 3.652 8 O -0.432 6.432 9 N -0.348 5.348 10 C 0.163 3.837 11 H 0.067 0.933 12 C -0.205 4.205 13 C -0.573 4.573 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.126 0.874 24 H 0.183 0.817 25 H 0.166 0.834 26 H 0.221 0.779 27 H 0.109 0.891 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.445 16.450 -1.137 16.670 hybrid contribution 1.642 -2.164 0.400 2.746 sum 4.086 14.286 -0.738 14.877 Atomic orbital electron populations 1.20615 0.86924 1.04159 1.03429 1.24448 1.01665 0.96422 1.03879 1.82834 0.95648 1.08392 1.72003 1.25297 1.01827 0.97170 1.13043 1.21325 0.95007 0.96261 1.00443 1.20536 0.92526 0.94875 1.10098 1.17549 0.86597 0.83559 0.77510 1.90670 1.14541 1.86038 1.51960 1.46421 1.09042 1.07598 1.71706 1.18759 0.95506 0.75408 0.94024 0.93251 1.22077 0.98202 1.02913 0.97333 1.21177 1.02043 0.92537 1.41518 0.92156 1.24879 0.95564 0.98055 0.95156 1.69892 1.21417 1.14960 1.45830 0.86505 0.81138 0.79756 0.79673 1.20185 1.21105 1.20162 0.90482 0.92091 0.87445 0.81746 0.83366 0.77942 0.89120 0.96607 0.95486 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.60 36.00 0.35 -0.99 16 2 C -0.14 -2.18 6.34 -35.11 -0.22 -2.41 16 3 S 0.15 1.69 22.97 -107.50 -2.47 -0.78 16 4 C -0.24 -2.76 11.12 28.86 0.32 -2.44 16 5 C -0.10 -1.40 9.91 -39.02 -0.39 -1.78 16 6 C -0.16 -2.80 5.98 -104.63 -0.63 -3.43 16 7 C 0.56 11.96 7.76 -12.62 -0.10 11.87 16 8 O -0.55 -13.30 13.72 5.25 0.07 -13.23 16 9 N -0.70 -15.20 5.05 -56.09 -0.28 -15.49 16 10 C 0.26 6.86 2.56 -69.09 -0.18 6.68 16 11 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 12 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 13 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.11 1.84 5.94 -51.93 -0.31 1.53 16 24 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 25 H 0.15 1.81 7.10 -52.49 -0.37 1.44 16 26 H 0.39 7.32 7.08 -40.82 -0.29 7.03 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -30.29 270.91 -7.22 -37.51 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.33 Total: 5.36 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.89 Total: -8.76 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.34 Total: -39.88 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.29 -7.22 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.912 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds