Wall clock time and date at job start Sun Mar 29 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70449 * 124.58953 * 2 1 4 4 C 1.75507 * 92.44645 * 179.97438 * 3 2 1 5 5 C 1.32775 * 110.57539 * 359.71636 * 4 3 2 6 6 C 1.36009 * 124.59735 * 179.97438 * 2 1 3 7 7 C 1.47196 * 123.45550 * 0.02562 * 6 2 1 8 8 O 1.21632 * 119.99845 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99850 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47135 * 325.00366 * 10 9 7 12 12 C 1.53000 * 109.47129 * 85.00009 * 10 9 7 13 13 C 1.50698 * 109.47526 * 205.00423 * 10 9 7 14 14 H 1.08001 * 119.99810 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99883 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00532 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99970 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47303 * 59.99495 * 17 15 13 19 19 H 1.48496 * 109.47492 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46858 * 300.00028 * 17 15 13 21 21 H 1.08997 * 109.47531 * 269.99930 * 1 2 3 22 22 H 1.08998 * 109.47334 * 30.00603 * 1 2 3 23 23 H 1.09003 * 109.46798 * 149.99976 * 1 2 3 24 24 H 1.07997 * 124.71155 * 179.97438 * 4 3 2 25 25 H 1.07998 * 123.45831 * 180.28337 * 5 4 3 26 26 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 27 27 H 1.08992 * 109.47302 * 180.02562 * 12 10 9 28 28 H 1.09006 * 109.47229 * 300.00705 * 12 10 9 29 29 H 1.09002 * 109.46821 * 60.00164 * 12 10 9 30 30 H 0.97005 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0008 5 6 3.6944 -0.8313 0.0072 6 6 2.2792 -1.1196 0.0005 7 6 1.7291 -2.4849 0.0006 8 8 0.5247 -2.6552 -0.0003 9 7 2.5598 -3.5461 0.0006 10 6 2.0124 -4.9050 0.0012 11 1 1.0960 -4.9272 0.5910 12 6 1.7047 -5.3315 -1.4356 13 6 3.0192 -5.8520 0.6016 14 1 3.9715 -5.4788 0.9485 15 6 2.7246 -7.1946 0.7081 16 7 1.5648 -7.6489 0.2862 17 14 3.9723 -8.3684 1.4530 18 1 4.2700 -7.9547 2.8478 19 1 3.4175 -9.7458 1.4535 20 1 5.2215 -8.3377 0.6504 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 4.9537 0.8939 0.0006 25 1 4.4577 -1.5953 0.0133 26 1 3.5203 -3.4102 0.0009 27 1 1.2969 -6.3422 -1.4351 28 1 0.9764 -4.6464 -1.8699 29 1 2.6211 -5.3092 -2.0253 30 1 1.3574 -8.5935 0.3614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294766132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:32 Heat of formation + Delta-G solvation = -37.357890 kcal Electronic energy + Delta-G solvation = -14662.183101 eV Core-core repulsion = 12161.854476 eV Total energy + Delta-G solvation = -2500.328625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84542 -37.95740 -36.68449 -34.37719 -32.78923 -31.09181 -27.94249 -27.33512 -24.84225 -22.97491 -21.95712 -20.45254 -18.58760 -18.13472 -17.31423 -16.85129 -16.25463 -15.98530 -15.18014 -14.62679 -14.48633 -14.41738 -14.21302 -13.66913 -13.55265 -13.06520 -12.96041 -12.86080 -12.73583 -12.50672 -12.27954 -12.14924 -11.95444 -11.13427 -10.68596 -10.53693 -9.88339 -9.65187 -9.27735 -8.18001 -6.36070 -0.14491 0.59903 0.98622 1.09400 1.44767 1.47253 1.55144 2.36465 2.48667 2.72948 3.12300 3.78422 3.98491 4.21982 4.44012 4.65565 4.67788 4.73110 4.90049 5.01377 5.07672 5.09608 5.27693 5.34835 5.44771 5.60943 5.68097 5.90503 6.08301 6.70711 6.95898 7.30926 7.52899 8.88357 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.005769 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.491802 B = 4852.608586 C = 5293.035223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.166 4.166 3 S 0.230 5.770 4 C -0.226 4.226 5 C -0.120 4.120 6 C -0.196 4.196 7 C 0.557 3.443 8 O -0.592 6.592 9 N -0.699 5.699 10 C 0.271 3.729 11 H -0.001 1.001 12 C -0.132 4.132 13 C -0.549 4.549 14 H 0.073 0.927 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.263 1.263 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.203 0.797 25 H 0.159 0.841 26 H 0.402 0.598 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.039 0.961 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 17.329 -0.874 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.286 4.286 3 S 0.496 5.504 4 C -0.360 4.360 5 C -0.148 4.148 6 C -0.213 4.213 7 C 0.344 3.656 8 O -0.476 6.476 9 N -0.347 5.347 10 C 0.168 3.832 11 H 0.017 0.983 12 C -0.191 4.191 13 C -0.587 4.587 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.188 1.188 21 H 0.096 0.904 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.220 0.780 25 H 0.177 0.823 26 H 0.238 0.762 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.985 18.546 -0.895 19.225 hybrid contribution 0.806 -2.636 0.317 2.775 sum 5.791 15.909 -0.578 16.940 Atomic orbital electron populations 1.20567 0.87155 1.03993 1.03419 1.24786 1.02426 0.98296 1.03109 1.82568 0.93787 1.04796 1.69279 1.25798 1.03770 0.96338 1.10120 1.21340 0.93425 0.97826 1.02243 1.20341 0.94650 0.92616 1.13736 1.18250 0.86056 0.85179 0.76096 1.90646 1.16367 1.87004 1.53601 1.46159 1.09907 1.06348 1.72283 1.18365 0.93772 0.77763 0.93316 0.98333 1.21894 0.98441 1.01387 0.97402 1.21499 1.02495 0.93018 1.41723 0.90918 1.25818 0.97456 0.99859 0.95405 1.70047 1.23378 1.15342 1.46801 0.85362 0.78762 0.77071 0.78922 1.19613 1.21047 1.18753 0.90411 0.88932 0.90962 0.77967 0.82332 0.76212 0.91290 0.97039 0.94141 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.67 9.60 71.23 0.68 -1.98 16 2 C -0.17 -4.82 6.34 25.17 0.16 -4.66 16 3 S 0.23 4.41 22.97 -56.49 -1.30 3.11 16 4 C -0.23 -4.26 11.12 66.64 0.74 -3.52 16 5 C -0.12 -3.06 9.91 22.67 0.22 -2.83 16 6 C -0.20 -6.65 5.98 -19.87 -0.12 -6.77 16 7 C 0.56 24.58 7.76 86.60 0.67 25.25 16 8 O -0.59 -30.45 13.72 -4.13 -0.06 -30.50 16 9 N -0.70 -31.20 5.05 -449.60 -2.27 -33.47 16 10 C 0.27 14.64 2.56 44.25 0.11 14.75 16 11 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 12 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 13 C -0.55 -29.77 8.73 25.60 0.22 -29.54 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 15 C 0.01 0.80 5.30 84.65 0.45 1.25 16 16 N -0.92 -53.36 11.32 21.44 0.24 -53.12 16 17 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 2.61 5.94 -2.39 -0.01 2.60 16 24 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.16 3.56 7.10 -2.91 -0.02 3.54 16 26 H 0.40 15.25 7.08 -92.71 -0.66 14.60 16 27 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 28 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -68.51 270.91 2.96 -65.54 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.50 Total: 18.42 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.81 Total: -14.35 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.03 Total: -86.58 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.06 Total: -30.50 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.30 Total: 3.11 kcal Total: -68.51 2.96 -65.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.187 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds