Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70449 * 124.59187 * 2 1 4 4 C 1.75510 * 92.44403 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57509 * 359.73803 * 4 3 2 6 6 C 1.36010 * 124.59097 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46099 * 359.97438 * 6 2 1 8 8 O 1.21633 * 119.99989 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 H 1.09001 * 109.47214 * 270.00020 * 1 2 3 21 21 H 1.08997 * 109.47051 * 30.00032 * 1 2 3 22 22 H 1.09000 * 109.47355 * 149.99965 * 1 2 3 23 23 H 1.08003 * 124.71007 * 179.97438 * 4 3 2 24 24 H 1.07998 * 123.45645 * 180.23154 * 5 4 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 26 26 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 27 27 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 28 28 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 29 29 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 30 30 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0016 10 6 2.0122 -4.9050 0.0045 11 6 3.1595 -5.9172 0.0089 12 6 2.5963 -7.3150 0.0144 13 1 1.5269 -7.4662 0.0152 14 6 3.4461 -8.4006 0.0186 15 7 4.7483 -8.2165 0.0181 16 14 2.7479 -10.1333 0.0262 17 1 1.9129 -10.3358 -1.1849 18 1 3.8615 -11.1156 0.0304 19 1 1.9142 -10.3257 1.2400 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 4.9538 0.8937 -0.0014 24 1 4.4576 -1.5955 0.0089 25 1 3.5202 -3.4103 -0.0019 26 1 1.3998 -5.0461 0.8952 27 1 1.3997 -5.0539 -0.8848 28 1 3.7718 -5.7761 -0.8818 29 1 3.7720 -5.7683 0.8982 30 1 5.3462 -8.9803 0.0206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294986782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -24.425107 kcal Electronic energy + Delta-G solvation = -14156.043948 eV Core-core repulsion = 11656.276130 eV Total energy + Delta-G solvation = -2499.767817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.60621 -36.84459 -34.91971 -32.88982 -31.86391 -29.82651 -27.13431 -24.90778 -23.24736 -21.48950 -20.86005 -19.08144 -17.28363 -16.39309 -16.37536 -15.15811 -15.02899 -14.52581 -14.02242 -13.88138 -13.39708 -13.14740 -12.83038 -12.63002 -12.27263 -12.10145 -11.60622 -11.21725 -11.09797 -11.01650 -10.65565 -10.32034 -9.75789 -9.44711 -9.17915 -8.85700 -8.63520 -8.45941 -8.26763 -6.09034 -4.11971 0.79824 1.43632 1.83261 2.03743 3.31593 3.35342 3.38420 3.65760 3.82634 4.42670 4.64456 4.94950 5.15401 5.27984 5.30797 5.53204 5.63231 5.89335 5.93187 6.22865 6.25666 6.35553 6.39698 6.74348 6.93948 7.51832 7.61791 7.88976 8.03469 8.28125 8.66344 8.93743 9.52822 11.02571 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.004386 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.837435 B = 6381.812452 C = 6870.889673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.141 4.141 3 S 0.158 5.842 4 C -0.236 4.236 5 C -0.102 4.102 6 C -0.170 4.170 7 C 0.570 3.430 8 O -0.547 6.547 9 N -0.715 5.715 10 C 0.122 3.878 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.106 0.894 23 H 0.167 0.833 24 H 0.150 0.850 25 H 0.397 0.603 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 18.837 -0.065 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.262 4.262 3 S 0.423 5.577 4 C -0.371 4.371 5 C -0.132 4.132 6 C -0.186 4.186 7 C 0.355 3.645 8 O -0.428 6.428 9 N -0.364 5.364 10 C 0.000 4.000 11 C -0.025 4.025 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.124 0.876 23 H 0.185 0.815 24 H 0.168 0.832 25 H 0.231 0.769 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.603 20.112 -0.066 20.280 hybrid contribution 0.737 -2.484 0.033 2.591 sum -1.867 17.628 -0.033 17.726 Atomic orbital electron populations 1.20631 0.86830 1.04277 1.03512 1.24493 1.01753 0.96611 1.03304 1.82928 0.95449 1.07976 1.71333 1.25348 1.02036 0.97156 1.12560 1.21317 0.94810 0.96434 1.00594 1.20345 0.92688 0.94272 1.11321 1.17575 0.86336 0.83694 0.76905 1.90690 1.14522 1.86183 1.51400 1.46209 1.09827 1.07013 1.73347 1.21748 0.98707 0.78679 1.00878 1.19327 0.92676 0.92661 0.97852 1.21012 0.93220 0.90379 1.51472 0.92277 1.24990 0.94804 0.99467 0.94958 1.69943 1.02030 1.31055 1.50313 0.86570 0.78517 0.83652 0.78789 1.20098 1.21236 1.20105 0.90353 0.91840 0.87562 0.81513 0.83207 0.76912 0.92441 0.92431 0.95925 0.95932 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.60 36.01 0.35 -0.81 16 2 C -0.14 -1.86 6.34 -35.11 -0.22 -2.08 16 3 S 0.16 1.58 22.97 -107.50 -2.47 -0.89 16 4 C -0.24 -2.39 11.12 28.86 0.32 -2.06 16 5 C -0.10 -1.24 9.91 -39.02 -0.39 -1.62 16 6 C -0.17 -2.52 5.98 -104.63 -0.63 -3.14 16 7 C 0.57 10.34 7.79 -12.62 -0.10 10.24 16 8 O -0.55 -11.35 14.06 5.25 0.07 -11.27 16 9 N -0.71 -13.05 5.53 -61.45 -0.34 -13.39 16 10 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.11 1.57 5.94 -51.93 -0.31 1.26 16 23 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 24 H 0.15 1.58 7.10 -52.49 -0.37 1.21 16 25 H 0.40 6.32 7.02 -40.82 -0.29 6.03 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 275.73 15.07 4.16 4.16 Total: -1.00 -31.19 275.73 -7.57 -38.77 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.47 Total: 1.66 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.24 Total: -9.98 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.40 Total: -38.82 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.19 -7.57 -38.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294986782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.342 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds