Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70449 * 124.59187 * 2 1 4 4 C 1.75510 * 92.44403 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57509 * 359.73803 * 4 3 2 6 6 C 1.36010 * 124.59097 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46099 * 359.97438 * 6 2 1 8 8 O 1.21633 * 119.99989 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 H 1.09001 * 109.47214 * 270.00020 * 1 2 3 21 21 H 1.08997 * 109.47051 * 30.00032 * 1 2 3 22 22 H 1.09000 * 109.47355 * 149.99965 * 1 2 3 23 23 H 1.08003 * 124.71007 * 179.97438 * 4 3 2 24 24 H 1.07998 * 123.45645 * 180.23154 * 5 4 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 26 26 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 27 27 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 28 28 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 29 29 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 30 30 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0016 10 6 2.0122 -4.9050 0.0045 11 6 3.1595 -5.9172 0.0089 12 6 2.5963 -7.3150 0.0144 13 1 1.5269 -7.4662 0.0152 14 6 3.4461 -8.4006 0.0186 15 7 4.7483 -8.2165 0.0181 16 14 2.7479 -10.1333 0.0262 17 1 1.9129 -10.3358 -1.1849 18 1 3.8615 -11.1156 0.0304 19 1 1.9142 -10.3257 1.2400 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 4.9538 0.8937 -0.0014 24 1 4.4576 -1.5955 0.0089 25 1 3.5202 -3.4103 -0.0019 26 1 1.3998 -5.0461 0.8952 27 1 1.3997 -5.0539 -0.8848 28 1 3.7718 -5.7761 -0.8818 29 1 3.7720 -5.7683 0.8982 30 1 5.3462 -8.9803 0.0206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294986782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -44.587124 kcal Electronic energy + Delta-G solvation = -14156.918238 eV Core-core repulsion = 11656.276130 eV Total energy + Delta-G solvation = -2500.642108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95641 -37.95974 -36.62562 -34.86114 -32.85412 -31.68102 -28.37630 -26.62765 -24.52359 -22.81996 -22.50609 -20.38009 -18.55134 -18.16503 -17.54753 -16.63243 -16.53315 -16.46068 -15.25721 -15.23236 -14.49870 -14.39361 -14.33537 -14.14453 -13.58930 -13.24789 -13.04996 -12.91787 -12.55421 -12.54047 -12.24202 -11.98812 -11.66108 -11.47599 -10.75380 -10.60557 -10.11065 -9.71380 -9.34431 -8.24338 -6.35172 -0.19365 0.56370 0.95399 1.01587 1.41842 1.44287 1.52296 2.31236 2.34875 2.49398 3.10347 3.74134 3.86877 4.16832 4.36214 4.47346 4.53104 4.64861 4.66595 4.82868 4.98902 5.05971 5.20417 5.30015 5.35445 5.49427 5.56220 5.77572 6.15079 6.60930 6.77509 7.23926 7.34178 8.87424 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.004386 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.837435 B = 6381.812452 C = 6870.889673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.161 4.161 3 S 0.233 5.767 4 C -0.228 4.228 5 C -0.121 4.121 6 C -0.200 4.200 7 C 0.566 3.434 8 O -0.581 6.581 9 N -0.712 5.712 10 C 0.142 3.858 11 C 0.023 3.977 12 C -0.549 4.549 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.081 0.919 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.201 0.799 24 H 0.159 0.841 25 H 0.408 0.592 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 20.349 -0.046 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.281 4.281 3 S 0.498 5.502 4 C -0.363 4.363 5 C -0.149 4.149 6 C -0.217 4.217 7 C 0.354 3.646 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.018 3.982 11 C -0.014 4.014 12 C -0.587 4.587 13 H 0.077 0.923 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.094 0.906 23 H 0.218 0.782 24 H 0.176 0.824 25 H 0.244 0.756 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.207 21.653 -0.047 21.766 hybrid contribution 0.629 -2.796 0.025 2.866 sum -1.578 18.858 -0.022 18.923 Atomic orbital electron populations 1.20601 0.86796 1.04197 1.03643 1.24831 1.02561 0.98166 1.02553 1.82691 0.93729 1.04860 1.68872 1.25807 1.03848 0.96507 1.10119 1.21359 0.93593 0.97800 1.02168 1.20216 0.94431 0.92498 1.14536 1.18134 0.85858 0.84918 0.75685 1.90668 1.15941 1.86923 1.52864 1.46021 1.10566 1.05871 1.73819 1.21250 0.97115 0.79934 0.99888 1.19132 0.93141 0.92822 0.96342 1.21433 0.93512 0.91973 1.51790 0.92269 1.25869 0.95100 1.03772 0.94305 1.70050 1.03241 1.32423 1.50874 0.85493 0.78004 0.78385 0.79137 1.19323 1.20502 1.19341 0.90091 0.89025 0.90561 0.78247 0.82405 0.75590 0.93442 0.93426 0.97317 0.97323 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.60 71.24 0.68 -1.57 16 2 C -0.16 -4.01 6.34 25.17 0.16 -3.85 16 3 S 0.23 3.85 22.97 -56.49 -1.30 2.55 16 4 C -0.23 -3.83 11.12 66.64 0.74 -3.09 16 5 C -0.12 -2.73 9.91 22.67 0.22 -2.50 16 6 C -0.20 -5.84 5.98 -19.87 -0.12 -5.96 16 7 C 0.57 21.09 7.79 86.60 0.67 21.77 16 8 O -0.58 -25.03 14.06 -4.14 -0.06 -25.09 16 9 N -0.71 -26.75 5.53 -466.58 -2.58 -29.33 16 10 C 0.14 6.34 5.61 86.38 0.48 6.83 16 11 C 0.02 1.19 5.09 29.85 0.15 1.34 16 12 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 16 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 2.32 5.94 -2.39 -0.01 2.31 16 23 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 24 H 0.16 3.15 7.10 -2.91 -0.02 3.13 16 25 H 0.41 13.29 7.02 -92.71 -0.65 12.64 16 26 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -67.73 275.73 2.57 -65.15 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.50 Total: 12.13 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 3.70 Total: -16.92 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.30 Total: -83.68 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.30 Total: 2.55 kcal Total: -67.73 2.57 -65.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294986782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.566 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds