Wall clock time and date at job start Sun Mar 29 2020 22:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46967 * 68.99233 * 3 2 1 5 5 C 1.37094 * 119.99566 * 264.13795 * 4 3 2 6 6 H 1.08009 * 119.99675 * 197.44052 * 5 4 3 7 7 C 1.38951 * 120.00413 * 17.43395 * 5 4 3 8 8 N 1.31409 * 119.99587 * 21.52873 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 201.52039 * 7 5 4 10 10 H 1.48504 * 109.46997 * 60.00639 * 9 7 5 11 11 H 1.48506 * 109.46838 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47588 * 300.00475 * 9 7 5 13 13 C 1.34771 * 119.99679 * 84.14081 * 4 3 2 14 14 O 1.21292 * 119.99399 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00689 * 359.97438 * 13 4 3 16 16 S 1.81394 * 109.47364 * 180.02562 * 15 13 4 17 17 C 1.81401 * 102.99940 * 180.02562 * 16 15 13 18 18 C 1.53000 * 117.49786 * 243.62008 * 17 16 15 19 19 C 1.53001 * 60.00186 * 252.51264 * 18 17 16 20 20 H 4.40640 * 5.51382 * 180.02562 * 4 1 2 21 21 H 1.08999 * 109.46966 * 308.99263 * 3 2 1 22 22 H 1.09003 * 109.46937 * 188.99173 * 3 2 1 23 23 H 0.97004 * 119.99630 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.46736 * 60.00404 * 15 13 4 25 25 H 1.08994 * 109.47046 * 300.00980 * 15 13 4 26 26 H 1.08996 * 115.55006 * 29.33218 * 17 16 15 27 27 H 1.08995 * 117.49849 * 0.02562 * 18 17 16 28 28 H 1.09002 * 117.49706 * 145.01852 * 18 17 16 29 29 H 1.09003 * 117.49732 * 252.51691 * 19 18 17 30 30 H 1.08993 * 117.52066 * 107.48375 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4943 -1.2894 5 6 3.4780 -1.8139 -1.4315 6 1 4.0907 -2.1258 -2.2645 7 6 3.0378 -2.7502 -0.5039 8 7 1.9864 -2.4928 0.2411 9 14 3.9407 -4.3747 -0.3161 10 1 5.3493 -4.1156 0.0765 11 1 3.2768 -5.1917 0.7313 12 1 3.9136 -5.1083 -1.6069 13 6 3.2465 0.3477 -2.3358 14 8 3.6514 -0.0620 -3.4032 15 6 2.8685 1.7981 -2.1797 16 16 3.1278 2.6632 -3.7529 17 6 2.6273 4.3644 -3.3704 18 6 1.4190 4.9305 -4.1189 19 6 2.8278 5.4213 -4.4584 20 1 -1.0499 0.0001 -0.0002 21 1 3.0097 -0.6458 0.7987 22 1 3.0089 1.0159 0.1606 23 1 1.6793 -3.1463 0.8889 24 1 3.4883 2.2540 -1.4076 25 1 1.8194 1.8714 -1.8937 26 1 2.7691 4.6746 -2.3352 27 1 0.9245 4.2807 -4.8408 28 1 0.7653 5.6133 -3.5760 29 1 3.1011 6.4269 -4.1388 30 1 3.2607 5.0946 -5.4038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296328468.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:45 Heat of formation + Delta-G solvation = 46.122795 kcal Electronic energy + Delta-G solvation = -14486.969210 eV Core-core repulsion = 11990.260580 eV Total energy + Delta-G solvation = -2496.708631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51073 -37.58017 -37.12067 -34.14321 -33.08490 -30.95869 -28.20711 -26.35204 -23.72805 -23.27708 -21.12979 -19.75129 -18.48274 -18.06796 -17.65900 -16.63413 -16.50034 -16.29902 -15.76011 -14.92306 -14.77466 -14.43102 -14.01059 -13.64402 -13.51189 -13.15333 -12.76235 -12.51417 -12.41915 -12.15775 -11.94648 -11.42886 -11.21760 -11.16187 -10.83229 -10.69961 -10.46508 -9.89109 -8.58344 -8.35987 -5.96959 0.56141 1.36410 1.42777 1.52486 1.65514 1.81332 2.09867 2.29762 2.35520 2.79031 3.00115 3.09949 3.80786 3.83852 3.95056 4.01510 4.07059 4.09620 4.29785 4.63015 4.75282 4.82311 4.92339 5.04328 5.23958 5.38664 5.44391 5.97949 6.37985 7.08011 7.10449 7.33063 7.88799 8.62502 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038796 B = 0.006355 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.555274 B = 4405.107401 C = 4944.157704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.158 4.158 3 C 0.232 3.768 4 N -0.443 5.443 5 C -0.355 4.355 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.869 5.869 9 Si 0.986 3.014 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.280 1.280 13 C 0.450 3.550 14 O -0.614 6.614 15 C -0.093 4.093 16 S -0.202 6.202 17 C -0.166 4.166 18 C -0.156 4.156 19 C -0.133 4.133 20 H 0.234 0.766 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.274 0.726 24 H 0.121 0.879 25 H 0.105 0.895 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 13.076 1.400 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.160 4.160 3 C 0.109 3.891 4 N -0.162 5.162 5 C -0.483 4.483 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.506 5.506 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.206 1.206 13 C 0.239 3.761 14 O -0.500 6.500 15 C -0.244 4.244 16 S 0.028 5.972 17 C -0.295 4.295 18 C -0.196 4.196 19 C -0.172 4.172 20 H 0.250 0.750 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.139 0.861 25 H 0.124 0.876 26 H 0.148 0.852 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.434 12.306 0.124 12.390 hybrid contribution -0.371 -0.819 1.297 1.578 sum -1.805 11.487 1.422 11.715 Atomic orbital electron populations 1.25170 0.96374 1.04299 1.00072 1.23417 0.94971 0.97235 1.00334 1.18377 0.84713 0.98976 0.86999 1.43812 1.55627 1.08229 1.08499 1.19544 1.31914 0.83560 1.13239 0.90699 1.25980 0.95322 1.02204 0.96256 1.70168 1.19600 1.37483 1.23303 0.85123 0.78830 0.77222 0.77896 1.19053 1.19544 1.20615 1.20020 0.84147 0.88067 0.83867 1.90520 1.52506 1.78980 1.28012 1.23305 1.06022 0.95265 0.99775 1.87224 1.86937 1.04813 1.18263 1.24326 1.09566 0.93584 1.02044 1.23336 0.91023 1.02870 1.02409 1.23036 0.98929 0.97640 0.97593 0.74981 0.88528 0.88340 0.91596 0.86070 0.87646 0.85150 0.88916 0.85989 0.85161 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.34 19.25 74.32 1.43 -7.91 16 2 C -0.16 -6.80 10.87 31.13 0.34 -6.47 16 3 C 0.23 9.99 4.91 84.58 0.42 10.41 16 4 N -0.44 -22.80 2.60 -645.41 -1.68 -24.48 16 5 C -0.36 -20.10 9.33 84.04 0.78 -19.32 16 6 H 0.08 4.59 7.39 -2.91 -0.02 4.57 16 7 C 0.01 0.34 4.87 84.93 0.41 0.75 16 8 N -0.87 -44.76 9.48 21.66 0.21 -44.56 16 9 Si 0.99 41.81 29.60 68.60 2.03 43.84 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.45 22.77 7.58 87.66 0.66 23.44 16 14 O -0.61 -36.31 15.51 -3.07 -0.05 -36.36 16 15 C -0.09 -3.52 5.03 71.23 0.36 -3.16 16 16 S -0.20 -7.36 21.09 -56.49 -1.19 -8.56 16 17 C -0.17 -4.05 6.36 30.60 0.19 -3.86 16 18 C -0.16 -3.09 10.30 30.59 0.31 -2.78 16 19 C -0.13 -2.51 10.30 30.60 0.32 -2.19 16 20 H 0.23 6.96 7.80 -4.42 -0.03 6.93 16 21 H 0.10 4.41 6.44 -2.39 -0.02 4.40 16 22 H 0.10 3.37 6.69 -2.39 -0.02 3.36 16 23 H 0.27 13.34 8.31 -92.70 -0.77 12.57 16 24 H 0.12 3.82 7.42 -2.39 -0.02 3.81 16 25 H 0.11 3.80 7.50 -2.39 -0.02 3.78 16 26 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -69.16 280.64 5.68 -63.48 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.13 Total: 17.72 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.23 Total: -11.09 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.47 Total: -69.04 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.05 Total: -36.36 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.19 Total: -8.56 kcal Total: -69.16 5.68 -63.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296328468.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.603 kcal (2) G-P(sol) polarization free energy of solvation -69.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds