Wall clock time and date at job start Sun Mar 29 2020 22:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99034 * 2 1 4 4 C 1.38225 * 120.02110 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.01519 * 0.22887 * 4 3 2 6 6 C 1.38328 * 119.98608 * 359.46979 * 5 4 3 7 7 Cl 1.73599 * 120.01449 * 180.27684 * 6 5 4 8 8 C 1.38197 * 119.99158 * 179.97438 * 2 1 3 9 9 C 1.50698 * 120.00680 * 359.97438 * 8 2 1 10 10 N 1.46497 * 109.47159 * 90.00141 * 9 8 2 11 11 C 1.46507 * 120.00061 * 269.99946 * 10 9 8 12 12 C 1.36933 * 120.00455 * 89.99657 * 10 9 8 13 13 H 1.08006 * 119.99953 * 21.00400 * 12 10 9 14 14 C 1.38810 * 120.00414 * 201.00892 * 12 10 9 15 15 N 1.31623 * 120.00006 * 14.49163 * 14 12 10 16 16 Si 1.86799 * 120.00060 * 194.48646 * 14 12 10 17 17 H 1.48500 * 109.47004 * 85.00215 * 16 14 12 18 18 H 1.48503 * 109.47214 * 205.00301 * 16 14 12 19 19 H 1.48500 * 109.47392 * 325.00134 * 16 14 12 20 20 H 1.09000 * 109.46561 * 90.00547 * 1 2 3 21 21 H 1.08994 * 109.47076 * 210.00281 * 1 2 3 22 22 H 1.08994 * 109.47318 * 330.00389 * 1 2 3 23 23 H 1.07997 * 119.98828 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99075 * 179.97438 * 4 3 2 25 25 H 1.08005 * 120.00624 * 179.74421 * 5 4 3 26 26 H 1.09000 * 109.47168 * 209.99690 * 9 8 2 27 27 H 1.09000 * 109.47166 * 329.99860 * 9 8 2 28 28 H 1.09001 * 109.46899 * 95.06670 * 11 10 9 29 29 H 1.08994 * 109.47280 * 215.06833 * 11 10 9 30 30 H 1.08996 * 109.46626 * 335.07233 * 11 10 9 31 31 H 0.96991 * 119.99810 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0005 5 6 4.2725 0.0017 -0.0059 6 6 3.5816 -1.1967 0.0004 7 17 4.4501 -2.6998 0.0010 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5020 0.0017 10 7 1.1997 -2.9258 -1.3791 11 6 -0.0215 -2.5034 -2.0696 12 6 2.1123 -3.7168 -2.0245 13 1 2.8187 -4.3020 -1.4543 14 6 2.1297 -3.7666 -3.4116 15 7 1.4811 -2.8595 -4.1109 16 14 3.0736 -5.1209 -4.2859 17 1 2.2178 -6.3295 -4.3952 18 1 3.4555 -4.6601 -5.6450 19 1 4.2980 -5.4496 -3.5125 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6578 2.1326 -0.0004 24 1 4.1198 2.1339 -0.0010 25 1 5.3526 0.0024 -0.0104 26 1 2.0336 -3.2613 0.5158 27 1 0.4922 -2.3713 0.5158 28 1 0.1844 -1.6085 -2.6569 29 1 -0.3600 -3.3015 -2.7301 30 1 -0.7971 -2.2857 -1.3354 31 1 1.4930 -2.8945 -5.0801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297026854.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:34 Heat of formation + Delta-G solvation = 37.619923 kcal Electronic energy + Delta-G solvation = -15303.956887 eV Core-core repulsion = 12804.835838 eV Total energy + Delta-G solvation = -2499.121049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08329 -35.71581 -35.48898 -32.53202 -31.38786 -29.94516 -27.05039 -25.65513 -25.42527 -22.01144 -21.20943 -19.87034 -16.70673 -16.12597 -15.28547 -14.90840 -14.63890 -13.94153 -13.33826 -13.07814 -12.77970 -12.63920 -12.22691 -12.11856 -11.83482 -11.27668 -10.94986 -10.84321 -10.71923 -10.65771 -10.45861 -10.24046 -10.08831 -9.84432 -9.65612 -8.48849 -8.10610 -7.98661 -6.74534 -5.68390 -3.09032 1.75973 1.85150 2.91799 3.42118 3.48128 3.49351 4.15894 4.57343 5.26014 5.26892 5.42850 5.56291 5.65265 5.69414 5.78543 5.99701 6.00650 6.15390 6.32564 6.44141 6.50645 6.68722 6.75182 6.81221 6.90720 7.18261 7.38441 7.40589 7.74471 7.90250 8.42234 9.27438 9.89228 10.37109 11.36812 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.010657 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.259560 B = 2626.738996 C = 3215.125051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.127 4.127 5 C -0.124 4.124 6 C -0.014 4.014 7 Cl -0.069 7.069 8 C -0.073 4.073 9 C 0.173 3.827 10 N -0.584 5.584 11 C 0.163 3.837 12 C -0.239 4.239 13 H 0.075 0.925 14 C 0.001 3.999 15 N -0.906 5.906 16 Si 0.899 3.101 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.000 1.000 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 6.086 8.987 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.041 4.041 7 Cl -0.040 7.040 8 C -0.078 4.078 9 C 0.046 3.954 10 N -0.304 5.304 11 C 0.018 3.982 12 C -0.369 4.369 13 H 0.093 0.907 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.730 3.270 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.712 5.902 8.765 10.591 hybrid contribution 0.842 -0.555 -0.886 1.343 sum 1.555 5.347 7.879 9.648 Atomic orbital electron populations 1.20871 0.91341 1.01852 1.02763 1.19625 0.95996 0.92002 0.99689 1.20946 0.94158 0.97285 1.01849 1.20808 0.94206 0.96936 1.02663 1.20893 0.99618 0.91216 1.02550 1.20677 0.92220 0.86768 1.04478 1.98335 1.76059 1.32890 1.96740 1.20899 0.92246 0.98319 0.96350 1.20113 0.96424 0.90007 0.88860 1.44164 1.20039 1.56170 1.10012 1.20887 0.84734 0.99561 0.92999 1.19322 1.12542 1.16099 0.88894 0.90678 1.24981 0.99773 0.98179 0.96809 1.70077 1.46244 1.33435 1.05395 0.86334 0.79776 0.81884 0.79041 1.21507 1.21831 1.20474 0.90660 0.91205 0.92491 0.86581 0.86308 0.86131 0.92196 0.92889 0.95238 0.93751 0.98190 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 8.60 36.01 0.31 -1.41 16 2 C -0.07 -1.29 5.88 -104.63 -0.62 -1.90 16 3 C -0.12 -1.99 9.70 -39.58 -0.38 -2.37 16 4 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 5 C -0.12 -2.15 9.83 -39.55 -0.39 -2.54 16 6 C -0.01 -0.27 6.31 -39.50 -0.25 -0.52 16 7 Cl -0.07 -1.37 25.66 -51.86 -1.33 -2.70 16 8 C -0.07 -1.48 5.47 -104.59 -0.57 -2.05 16 9 C 0.17 3.62 5.04 -5.20 -0.03 3.59 16 10 N -0.58 -14.50 2.91 -182.50 -0.53 -15.03 16 11 C 0.16 3.93 7.89 59.85 0.47 4.40 16 12 C -0.24 -6.49 8.91 -15.06 -0.13 -6.63 16 13 H 0.08 2.02 6.98 -52.48 -0.37 1.66 16 14 C 0.00 0.02 5.07 -17.43 -0.09 -0.07 16 15 N -0.91 -26.61 10.68 55.49 0.59 -26.01 16 16 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 21 H 0.07 1.05 5.82 -51.93 -0.30 0.74 16 22 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 23 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 24 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 25 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 26 H 0.06 1.25 6.79 -51.93 -0.35 0.90 16 27 H 0.05 0.99 5.66 -51.93 -0.29 0.70 16 28 H 0.03 0.78 7.28 -51.93 -0.38 0.40 16 29 H 0.04 1.16 7.24 -51.93 -0.38 0.78 16 30 H 0.00 -0.01 7.17 -51.93 -0.37 -0.38 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -29.96 267.78 -7.98 -37.94 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -3.65 Total: -3.67 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.07 Total: -11.90 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.06 Total: -41.05 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.33 Total: -2.70 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.96 -7.98 -37.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297026854.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.558 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds