Wall clock time and date at job start Sun Mar 29 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99034 * 2 1 4 4 C 1.38225 * 120.02110 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.01519 * 0.22887 * 4 3 2 6 6 C 1.38328 * 119.98608 * 359.46979 * 5 4 3 7 7 Cl 1.73599 * 120.01449 * 180.27684 * 6 5 4 8 8 C 1.38197 * 119.99158 * 179.97438 * 2 1 3 9 9 C 1.50698 * 120.00680 * 359.97438 * 8 2 1 10 10 N 1.46497 * 109.47159 * 90.00141 * 9 8 2 11 11 C 1.46507 * 120.00061 * 269.99946 * 10 9 8 12 12 C 1.36933 * 120.00455 * 89.99657 * 10 9 8 13 13 H 1.08006 * 119.99953 * 21.00400 * 12 10 9 14 14 C 1.38810 * 120.00414 * 201.00892 * 12 10 9 15 15 N 1.31623 * 120.00006 * 14.49163 * 14 12 10 16 16 Si 1.86799 * 120.00060 * 194.48646 * 14 12 10 17 17 H 1.48500 * 109.47004 * 85.00215 * 16 14 12 18 18 H 1.48503 * 109.47214 * 205.00301 * 16 14 12 19 19 H 1.48500 * 109.47392 * 325.00134 * 16 14 12 20 20 H 1.09000 * 109.46561 * 90.00547 * 1 2 3 21 21 H 1.08994 * 109.47076 * 210.00281 * 1 2 3 22 22 H 1.08994 * 109.47318 * 330.00389 * 1 2 3 23 23 H 1.07997 * 119.98828 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99075 * 179.97438 * 4 3 2 25 25 H 1.08005 * 120.00624 * 179.74421 * 5 4 3 26 26 H 1.09000 * 109.47168 * 209.99690 * 9 8 2 27 27 H 1.09000 * 109.47166 * 329.99860 * 9 8 2 28 28 H 1.09001 * 109.46899 * 95.06670 * 11 10 9 29 29 H 1.08994 * 109.47280 * 215.06833 * 11 10 9 30 30 H 1.08996 * 109.46626 * 335.07233 * 11 10 9 31 31 H 0.96991 * 119.99810 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0005 5 6 4.2725 0.0017 -0.0059 6 6 3.5816 -1.1967 0.0004 7 17 4.4501 -2.6998 0.0010 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5020 0.0017 10 7 1.1997 -2.9258 -1.3791 11 6 -0.0215 -2.5034 -2.0696 12 6 2.1123 -3.7168 -2.0245 13 1 2.8187 -4.3020 -1.4543 14 6 2.1297 -3.7666 -3.4116 15 7 1.4811 -2.8595 -4.1109 16 14 3.0736 -5.1209 -4.2859 17 1 2.2178 -6.3295 -4.3952 18 1 3.4555 -4.6601 -5.6450 19 1 4.2980 -5.4496 -3.5125 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6578 2.1326 -0.0004 24 1 4.1198 2.1339 -0.0010 25 1 5.3526 0.0024 -0.0104 26 1 2.0336 -3.2613 0.5158 27 1 0.4922 -2.3713 0.5158 28 1 0.1844 -1.6085 -2.6569 29 1 -0.3600 -3.3015 -2.7301 30 1 -0.7971 -2.2857 -1.3354 31 1 1.4930 -2.8945 -5.0801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297026854.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:33 Heat of formation + Delta-G solvation = 21.492920 kcal Electronic energy + Delta-G solvation = -15304.656207 eV Core-core repulsion = 12804.835838 eV Total energy + Delta-G solvation = -2499.820369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.47155 -37.31225 -37.19996 -34.11104 -32.98702 -31.61439 -28.53404 -27.57780 -26.97168 -23.73123 -22.64961 -21.39205 -18.69580 -17.52415 -16.75589 -16.73038 -16.08576 -15.68715 -15.12699 -14.66570 -14.22179 -14.14050 -13.65916 -13.57554 -13.39284 -12.91370 -12.79263 -12.70465 -12.37828 -12.17725 -12.09094 -11.99222 -11.75965 -11.59169 -11.39198 -10.56624 -9.49187 -9.38638 -8.74338 -7.77432 -5.20143 0.39696 0.49268 1.43747 1.44882 1.45828 1.52210 2.52808 2.81959 3.38099 3.88815 3.94845 4.06437 4.19553 4.31076 4.47515 4.70163 4.74970 4.84022 4.87286 4.97939 5.04145 5.08852 5.33091 5.40196 5.47965 5.55587 5.72280 5.78776 5.79322 6.10124 6.37898 7.21330 7.91513 8.33995 9.26287 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.010657 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.259560 B = 2626.738996 C = 3215.125051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.135 4.135 6 C -0.037 4.037 7 Cl -0.082 7.082 8 C -0.102 4.102 9 C 0.175 3.825 10 N -0.600 5.600 11 C 0.181 3.819 12 C -0.232 4.232 13 H 0.073 0.927 14 C -0.053 4.053 15 N -0.938 5.938 16 Si 0.950 3.050 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.274 1.274 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.151 0.849 24 H 0.158 0.842 25 H 0.138 0.862 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.002 0.998 29 H 0.014 0.986 30 H 0.035 0.965 31 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 7.735 10.217 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.065 4.065 7 Cl -0.054 7.054 8 C -0.106 4.106 9 C 0.049 3.951 10 N -0.321 5.321 11 C 0.037 3.963 12 C -0.362 4.362 13 H 0.091 0.909 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.780 3.220 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.199 1.199 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.109 0.891 23 H 0.169 0.831 24 H 0.175 0.825 25 H 0.156 0.844 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.847 7.557 10.046 12.599 hybrid contribution 0.818 -0.943 -1.092 1.659 sum 1.665 6.615 8.953 11.256 Atomic orbital electron populations 1.20876 0.89767 1.03597 1.02262 1.20018 0.97398 0.91980 0.98999 1.21404 0.94625 0.97965 1.00244 1.21319 0.94438 0.97761 0.99953 1.21224 1.00767 0.91030 1.02391 1.21008 0.92526 0.87193 1.05740 1.98320 1.76234 1.33927 1.96879 1.20838 0.92552 0.98492 0.98677 1.20115 0.97687 0.90620 0.86662 1.44258 1.19953 1.56955 1.10952 1.20590 0.85512 0.97110 0.93125 1.19493 1.11795 1.15939 0.88996 0.90937 1.25570 1.01439 1.00143 0.97602 1.70226 1.48399 1.35084 1.04860 0.85523 0.78907 0.79893 0.77723 1.21188 1.22480 1.19948 0.92085 0.91161 0.89146 0.83116 0.82466 0.84433 0.92821 0.90688 0.97952 0.96708 0.94623 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.04 8.60 71.24 0.61 -2.43 16 2 C -0.08 -2.76 5.88 -19.87 -0.12 -2.88 16 3 C -0.12 -3.51 9.70 22.27 0.22 -3.29 16 4 C -0.12 -3.19 10.05 22.26 0.22 -2.97 16 5 C -0.14 -4.40 9.83 22.29 0.22 -4.18 16 6 C -0.04 -1.44 6.31 22.32 0.14 -1.30 16 7 Cl -0.08 -3.26 25.66 -2.72 -0.07 -3.33 16 8 C -0.10 -3.97 5.47 -19.84 -0.11 -4.08 16 9 C 0.17 7.20 5.04 85.63 0.43 7.63 16 10 N -0.60 -29.82 2.91 -731.32 -2.13 -31.94 16 11 C 0.18 8.80 7.89 127.77 1.01 9.81 16 12 C -0.23 -12.70 8.91 84.03 0.75 -11.95 16 13 H 0.07 3.94 6.98 -2.91 -0.02 3.92 16 14 C -0.05 -3.04 5.07 84.86 0.43 -2.61 16 15 N -0.94 -56.33 10.68 21.65 0.23 -56.10 16 16 Si 0.95 46.66 29.58 68.60 2.03 48.69 16 17 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 18 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 19 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 20 H 0.06 1.91 7.37 -2.39 -0.02 1.89 16 21 H 0.07 1.93 5.82 -2.39 -0.01 1.91 16 22 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 23 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 24 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 25 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 26 H 0.05 2.24 6.79 -2.39 -0.02 2.22 16 27 H 0.08 2.69 5.66 -2.39 -0.01 2.67 16 28 H 0.00 0.12 7.28 -2.39 -0.02 0.10 16 29 H 0.01 0.77 7.24 -2.39 -0.02 0.75 16 30 H 0.04 1.43 7.17 -2.39 -0.02 1.41 16 31 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -64.92 267.78 5.00 -59.92 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.13 Total: 1.01 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.81 Total: -18.25 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -1.90 Total: -88.04 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.07 Total: -3.33 kcal Total: -64.92 5.00 -59.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297026854.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.417 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds