Wall clock time and date at job start Sun Mar 29 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47165 * 312.65947 * 3 2 1 5 5 C 1.37101 * 120.00224 * 263.68025 * 4 3 2 6 6 H 1.07994 * 120.00356 * 200.02065 * 5 4 3 7 7 C 1.38951 * 119.99542 * 20.02085 * 5 4 3 8 8 N 1.31413 * 120.00284 * 21.60790 * 7 5 4 9 9 Si 1.86801 * 120.00086 * 201.60467 * 7 5 4 10 10 H 1.48502 * 109.46954 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47487 * 120.00052 * 9 7 5 12 12 H 1.48503 * 109.47193 * 240.00574 * 9 7 5 13 13 C 1.34772 * 120.00295 * 83.68218 * 4 3 2 14 14 O 1.21295 * 120.00544 * 179.97438 * 13 4 3 15 15 C 1.50707 * 119.99827 * 0.02562 * 13 4 3 16 16 H 1.09005 * 108.84572 * 302.87563 * 15 13 4 17 17 C 1.52941 * 108.88960 * 184.43713 * 15 13 4 18 18 C 1.55149 * 108.95891 * 209.10610 * 17 15 13 19 19 S 1.83980 * 100.91322 * 41.43255 * 18 17 15 20 20 C 1.53700 * 108.88945 * 61.44764 * 15 13 4 21 21 H 4.40630 * 5.51452 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.47491 * 72.66068 * 3 2 1 23 23 H 1.09003 * 109.47028 * 192.65931 * 3 2 1 24 24 H 0.97001 * 119.99986 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.60054 * 329.03193 * 17 15 13 26 26 H 1.08991 * 109.60431 * 89.16845 * 17 15 13 27 27 H 1.09003 * 111.12674 * 283.52214 * 18 17 15 28 28 H 1.09003 * 111.16697 * 159.36457 * 18 17 15 29 29 H 1.08997 * 110.34350 * 242.49723 * 20 15 13 30 30 H 1.08998 * 110.34320 * 4.64753 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.9351 1.0157 5 6 3.4862 -0.4755 2.2587 6 1 4.1331 -1.0666 2.8899 7 6 3.0101 0.7507 2.7062 8 7 1.9275 1.2699 2.1721 9 14 3.9089 1.6613 4.0673 10 1 5.0903 0.8702 4.4957 11 1 4.3561 2.9855 3.5655 12 1 2.9952 1.8524 5.2222 13 6 3.2388 -2.2477 0.7284 14 8 3.6439 -3.0224 1.5692 15 6 2.8530 -2.7528 -0.6381 16 1 1.8182 -2.4741 -0.8373 17 6 2.9633 -4.2782 -0.6515 18 6 3.3011 -4.7465 -2.0915 19 16 4.5418 -3.4816 -2.5871 20 6 3.7580 -2.0885 -1.6880 21 1 -1.0498 -0.0001 0.0004 22 1 3.0095 -0.3054 -0.9809 23 1 3.0088 1.0035 0.2252 24 1 1.5949 2.1258 2.4848 25 1 3.7530 -4.5937 0.0304 26 1 2.0160 -4.7161 -0.3372 27 1 2.4215 -4.7070 -2.7340 28 1 3.7378 -5.7452 -2.0883 29 1 3.1636 -1.4827 -2.3718 30 1 4.5163 -1.4753 -1.2011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300798409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:42 Heat of formation + Delta-G solvation = 33.468861 kcal Electronic energy + Delta-G solvation = -15275.814078 eV Core-core repulsion = 12778.556731 eV Total energy + Delta-G solvation = -2497.257346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23347 -35.57889 -34.75972 -32.16609 -31.33739 -29.54124 -26.44168 -25.58999 -24.32786 -21.23154 -18.72641 -17.98404 -16.85882 -16.73068 -15.88507 -15.31206 -14.57707 -14.33228 -13.85679 -13.63946 -13.18331 -12.55397 -12.39901 -12.21736 -11.86537 -11.50815 -11.45331 -11.27840 -11.02680 -10.53591 -10.46307 -10.34724 -9.81203 -9.42430 -9.29386 -8.95699 -8.47387 -7.91622 -7.50859 -6.38642 -3.93030 2.04793 2.48877 3.09923 3.22994 3.29519 3.58775 3.81344 3.96956 4.12738 4.63445 4.84509 5.04802 5.14947 5.21813 5.31293 5.39719 5.42436 5.61822 5.79529 5.87491 5.96285 6.23097 6.28456 6.55837 6.63721 6.95190 7.51417 7.99225 8.35443 8.73992 9.06470 9.28283 9.82279 10.61924 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032368 B = 0.008039 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.840892 B = 3482.358974 C = 3824.122155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.116 4.116 3 C 0.222 3.778 4 N -0.436 5.436 5 C -0.317 4.317 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.859 5.859 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.458 3.542 14 O -0.576 6.576 15 C -0.110 4.110 16 H 0.092 0.908 17 C -0.110 4.110 18 C -0.064 4.064 19 S -0.310 6.310 20 C -0.054 4.054 21 H 0.199 0.801 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.268 0.732 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -3.425 -8.466 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.118 4.118 3 C 0.098 3.902 4 N -0.154 5.154 5 C -0.444 4.444 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.459 6.459 15 C -0.133 4.133 16 H 0.111 0.889 17 C -0.149 4.149 18 C -0.212 4.212 19 S -0.084 6.084 20 C -0.203 4.203 21 H 0.216 0.784 22 H 0.088 0.912 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.537 -3.675 -8.695 9.455 hybrid contribution -1.196 0.889 1.396 2.042 sum -0.659 -2.787 -7.299 7.841 Atomic orbital electron populations 1.24281 0.95379 1.03424 1.04508 1.23137 0.94328 0.97725 0.96582 1.18512 0.84469 0.96726 0.90491 1.43640 1.55710 1.04131 1.11931 1.19690 1.28134 1.03240 0.93380 0.87789 1.25317 0.94974 0.98218 0.98710 1.70094 1.17801 1.18874 1.42854 0.85973 0.79800 0.79230 0.80388 1.19139 1.20559 1.20857 1.19774 0.84496 0.82522 0.88694 1.90513 1.50955 1.54692 1.49764 1.21728 1.00752 0.95873 0.94994 0.88937 1.22261 1.04459 0.93075 0.95125 1.24347 0.98655 0.99380 0.98794 1.87617 1.41222 1.09874 1.69723 1.24156 1.00795 0.97162 0.98147 0.78353 0.91162 0.87520 0.92147 0.88315 0.90320 0.89485 0.87834 0.88708 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.12 -2.51 10.63 -37.12 -0.39 -2.90 16 3 C 0.22 4.70 4.70 -6.83 -0.03 4.67 16 4 N -0.44 -10.66 2.56 -117.94 -0.30 -10.96 16 5 C -0.32 -8.55 9.27 -14.93 -0.14 -8.68 16 6 H 0.10 2.97 7.43 -52.49 -0.39 2.58 16 7 C 0.03 0.83 4.83 -17.47 -0.08 0.75 16 8 N -0.86 -22.13 9.60 55.50 0.53 -21.60 16 9 Si 0.92 20.15 29.60 -169.99 -5.03 15.12 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.46 10.75 6.64 -10.98 -0.07 10.68 16 14 O -0.58 -15.50 15.00 5.54 0.08 -15.42 16 15 C -0.11 -1.99 2.34 -91.43 -0.21 -2.20 16 16 H 0.09 1.62 7.29 -51.93 -0.38 1.24 16 17 C -0.11 -1.77 5.56 -25.62 -0.14 -1.91 16 18 C -0.06 -0.83 7.52 38.29 0.29 -0.54 16 19 S -0.31 -4.79 23.23 -107.50 -2.50 -7.28 16 20 C -0.05 -0.87 4.98 37.52 0.19 -0.68 16 21 H 0.20 3.23 7.80 -54.10 -0.42 2.81 16 22 H 0.07 1.23 4.09 -51.93 -0.21 1.02 16 23 H 0.11 2.40 6.60 -51.93 -0.34 2.06 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.10 1.83 6.86 -51.93 -0.36 1.47 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.31 7.40 -51.93 -0.38 0.93 16 30 H 0.10 1.80 7.02 -51.93 -0.36 1.44 16 LS Contribution 264.28 15.07 3.98 3.98 Total: -1.00 -30.10 264.28 -6.52 -36.62 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.25 Total: 4.95 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.04 Total: -5.41 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.23 Total: -32.56 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.50 Total: -7.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.10 -6.52 -36.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.086 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds