Wall clock time and date at job start Sun Mar 29 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47165 * 312.65947 * 3 2 1 5 5 C 1.37101 * 120.00224 * 263.68025 * 4 3 2 6 6 H 1.07994 * 120.00356 * 200.02065 * 5 4 3 7 7 C 1.38951 * 119.99542 * 20.02085 * 5 4 3 8 8 N 1.31413 * 120.00284 * 21.60790 * 7 5 4 9 9 Si 1.86801 * 120.00086 * 201.60467 * 7 5 4 10 10 H 1.48502 * 109.46954 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47487 * 120.00052 * 9 7 5 12 12 H 1.48503 * 109.47193 * 240.00574 * 9 7 5 13 13 C 1.34772 * 120.00295 * 83.68218 * 4 3 2 14 14 O 1.21295 * 120.00544 * 179.97438 * 13 4 3 15 15 C 1.50707 * 119.99827 * 0.02562 * 13 4 3 16 16 H 1.09005 * 108.84572 * 302.87563 * 15 13 4 17 17 C 1.52941 * 108.88960 * 184.43713 * 15 13 4 18 18 C 1.55149 * 108.95891 * 209.10610 * 17 15 13 19 19 S 1.83980 * 100.91322 * 41.43255 * 18 17 15 20 20 C 1.53700 * 108.88945 * 61.44764 * 15 13 4 21 21 H 4.40630 * 5.51452 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.47491 * 72.66068 * 3 2 1 23 23 H 1.09003 * 109.47028 * 192.65931 * 3 2 1 24 24 H 0.97001 * 119.99986 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.60054 * 329.03193 * 17 15 13 26 26 H 1.08991 * 109.60431 * 89.16845 * 17 15 13 27 27 H 1.09003 * 111.12674 * 283.52214 * 18 17 15 28 28 H 1.09003 * 111.16697 * 159.36457 * 18 17 15 29 29 H 1.08997 * 110.34350 * 242.49723 * 20 15 13 30 30 H 1.08998 * 110.34320 * 4.64753 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.9351 1.0157 5 6 3.4862 -0.4755 2.2587 6 1 4.1331 -1.0666 2.8899 7 6 3.0101 0.7507 2.7062 8 7 1.9275 1.2699 2.1721 9 14 3.9089 1.6613 4.0673 10 1 5.0903 0.8702 4.4957 11 1 4.3561 2.9855 3.5655 12 1 2.9952 1.8524 5.2222 13 6 3.2388 -2.2477 0.7284 14 8 3.6439 -3.0224 1.5692 15 6 2.8530 -2.7528 -0.6381 16 1 1.8182 -2.4741 -0.8373 17 6 2.9633 -4.2782 -0.6515 18 6 3.3011 -4.7465 -2.0915 19 16 4.5418 -3.4816 -2.5871 20 6 3.7580 -2.0885 -1.6880 21 1 -1.0498 -0.0001 0.0004 22 1 3.0095 -0.3054 -0.9809 23 1 3.0088 1.0035 0.2252 24 1 1.5949 2.1258 2.4848 25 1 3.7530 -4.5937 0.0304 26 1 2.0160 -4.7161 -0.3372 27 1 2.4215 -4.7070 -2.7340 28 1 3.7378 -5.7452 -2.0883 29 1 3.1636 -1.4827 -2.3718 30 1 4.5163 -1.4753 -1.2011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300798409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:42 Heat of formation + Delta-G solvation = 15.844580 kcal Electronic energy + Delta-G solvation = -15276.578324 eV Core-core repulsion = 12778.556731 eV Total energy + Delta-G solvation = -2498.021593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98302 -37.31761 -36.35519 -33.99745 -33.07213 -30.86940 -28.16556 -27.23082 -25.87498 -22.73669 -20.34311 -19.72615 -18.61231 -18.20172 -17.37004 -16.99990 -16.25839 -16.02911 -15.35642 -15.08781 -14.71742 -14.12019 -13.98077 -13.77501 -13.59744 -12.98246 -12.87591 -12.72820 -12.62415 -12.44476 -12.14630 -11.80369 -11.21465 -11.08866 -11.01055 -10.64612 -10.29840 -9.83873 -8.70915 -8.34399 -5.96578 0.85121 1.29128 1.35110 1.41732 1.54347 1.85645 2.10261 2.31395 2.36666 2.99218 3.05165 3.60949 3.74929 3.87021 3.89225 3.98951 4.25717 4.36012 4.50493 4.54891 4.65987 4.78653 4.90318 4.98369 5.24088 5.41336 5.45556 6.04037 6.41111 7.11439 7.13744 7.38246 7.94172 8.63877 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032368 B = 0.008039 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.840892 B = 3482.358974 C = 3824.122155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.158 4.158 3 C 0.225 3.775 4 N -0.447 5.447 5 C -0.354 4.354 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.981 3.019 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.280 1.280 13 C 0.446 3.554 14 O -0.623 6.623 15 C -0.099 4.099 16 H 0.103 0.897 17 C -0.110 4.110 18 C -0.045 4.045 19 S -0.329 6.329 20 C -0.052 4.052 21 H 0.233 0.767 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 -3.272 -9.891 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.159 4.159 3 C 0.103 3.897 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.504 5.504 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.206 1.206 13 C 0.236 3.764 14 O -0.510 6.510 15 C -0.121 4.121 16 H 0.121 0.879 17 C -0.150 4.150 18 C -0.192 4.192 19 S -0.104 6.104 20 C -0.200 4.200 21 H 0.250 0.750 22 H 0.122 0.878 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.612 -3.502 -10.153 10.757 hybrid contribution -0.893 0.810 1.858 2.215 sum -1.505 -2.692 -8.295 8.850 Atomic orbital electron populations 1.25143 0.96324 1.01595 1.02733 1.23377 0.94912 0.99403 0.98219 1.18555 0.84864 0.95217 0.91102 1.43825 1.55679 1.05145 1.11806 1.19556 1.29427 1.04315 0.94858 0.90917 1.25956 0.95286 0.98024 1.00599 1.70171 1.17928 1.18929 1.43372 0.85078 0.78302 0.78294 0.77844 1.20013 1.18918 1.20593 1.20732 0.83197 0.81971 0.90530 1.90474 1.52794 1.55821 1.51871 1.21696 1.01458 0.97118 0.91878 0.87854 1.22219 1.04142 0.91792 0.96808 1.24433 0.98917 0.99263 0.96605 1.87722 1.42819 1.10637 1.69180 1.24069 1.00356 0.97544 0.98012 0.75023 0.87759 0.89367 0.91770 0.91325 0.89000 0.86496 0.85723 0.85957 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.03 19.25 74.32 1.43 -7.60 16 2 C -0.16 -6.62 10.63 31.12 0.33 -6.29 16 3 C 0.23 9.53 4.70 84.57 0.40 9.93 16 4 N -0.45 -22.37 2.56 -645.43 -1.66 -24.02 16 5 C -0.35 -19.77 9.27 84.04 0.78 -18.99 16 6 H 0.07 4.41 7.43 -2.91 -0.02 4.39 16 7 C 0.01 0.28 4.83 84.93 0.41 0.69 16 8 N -0.87 -44.48 9.60 21.66 0.21 -44.27 16 9 Si 0.98 41.72 29.60 68.60 2.03 43.75 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.45 21.46 6.64 87.66 0.58 22.05 16 14 O -0.62 -35.04 15.00 -3.08 -0.05 -35.09 16 15 C -0.10 -3.45 2.34 -11.32 -0.03 -3.48 16 16 H 0.10 3.41 7.29 -2.38 -0.02 3.40 16 17 C -0.11 -3.40 5.56 31.31 0.17 -3.22 16 18 C -0.04 -1.02 7.52 72.72 0.55 -0.48 16 19 S -0.33 -9.51 23.23 -56.49 -1.31 -10.82 16 20 C -0.05 -1.58 4.98 72.22 0.36 -1.22 16 21 H 0.23 6.71 7.80 -4.43 -0.03 6.68 16 22 H 0.11 3.57 4.09 -2.39 -0.01 3.56 16 23 H 0.09 4.01 6.60 -2.39 -0.02 4.00 16 24 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 25 H 0.07 2.56 6.86 -2.38 -0.02 2.55 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.12 3.04 7.40 -2.39 -0.02 3.03 16 30 H 0.09 3.00 7.02 -2.39 -0.02 2.99 16 Total: -1.00 -66.64 264.28 5.35 -61.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.14 Total: 17.76 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.98 Total: -8.61 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -1.45 Total: -68.29 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.05 Total: -35.09 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: -9.51 SS G_CDS: -1.31 Total: -10.82 kcal Total: -66.64 5.35 -61.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.136 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds