Wall clock time and date at job start Sun Mar 29 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47048 * 247.60598 * 3 2 1 5 5 C 1.37092 * 120.00404 * 264.23351 * 4 3 2 6 6 H 1.07997 * 120.00388 * 139.68776 * 5 4 3 7 7 C 1.38951 * 120.00144 * 319.68852 * 5 4 3 8 8 N 1.31420 * 119.99573 * 343.17194 * 7 5 4 9 9 Si 1.86797 * 120.00438 * 163.17160 * 7 5 4 10 10 H 1.48502 * 109.47108 * 89.99951 * 9 7 5 11 11 H 1.48499 * 109.47409 * 210.00418 * 9 7 5 12 12 H 1.48502 * 109.46791 * 330.00192 * 9 7 5 13 13 C 1.34783 * 119.99627 * 84.23843 * 4 3 2 14 14 O 1.21292 * 119.99900 * 5.34477 * 13 4 3 15 15 C 1.50697 * 119.99693 * 185.35296 * 13 4 3 16 16 H 1.08998 * 109.60506 * 27.19686 * 15 13 4 17 17 C 1.52939 * 109.60468 * 147.52596 * 15 13 4 18 18 C 1.53711 * 112.49501 * 149.84440 * 17 15 13 19 19 S 1.83395 * 104.96598 * 357.17510 * 18 17 15 20 20 C 1.55158 * 109.45280 * 266.96573 * 15 13 4 21 21 H 4.40634 * 5.51491 * 179.97438 * 4 1 2 22 22 H 1.09003 * 109.46706 * 127.61246 * 3 2 1 23 23 H 1.08997 * 109.47006 * 7.61222 * 3 2 1 24 24 H 0.97007 * 119.99584 * 179.97438 * 8 7 5 25 25 H 1.08996 * 108.88928 * 29.04717 * 17 15 13 26 26 H 1.09006 * 108.88728 * 270.64380 * 17 15 13 27 27 H 1.09002 * 110.33895 * 238.30130 * 18 17 15 28 28 H 1.08996 * 110.42600 * 116.09088 * 18 17 15 29 29 H 1.08998 * 111.12953 * 80.80882 * 20 15 13 30 30 H 1.08996 * 111.12881 * 316.63666 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5271 1.2770 5 6 3.4744 1.8504 1.3879 6 1 3.2130 2.4025 2.2785 7 6 4.1558 2.4815 0.3543 8 7 4.7613 1.7659 -0.5668 9 14 4.2113 4.3469 0.2740 10 1 5.3953 4.8396 1.0227 11 1 4.3070 4.7788 -1.1436 12 1 2.9754 4.9053 0.8792 13 6 3.2486 -0.2898 2.3430 14 8 3.0408 -1.4785 2.2211 15 6 3.6345 0.2740 3.6862 16 1 3.3205 1.3159 3.7494 17 6 2.9587 -0.5338 4.7951 18 6 3.7878 -0.5647 6.0891 19 16 5.3256 0.3506 5.6880 20 6 5.1733 0.1824 3.8622 21 1 -1.0501 0.0001 -0.0002 22 1 3.0090 0.6281 -0.8141 23 1 3.0098 -1.0178 -0.1361 24 1 5.2367 2.2064 -1.2885 25 1 2.8101 -1.5559 4.4468 26 1 1.9854 -0.0925 5.0101 27 1 4.0201 -1.5931 6.3657 28 1 3.2508 -0.0677 6.8969 29 1 5.6769 1.0015 3.3487 30 1 5.5508 -0.7824 3.5236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300798412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:44 Heat of formation + Delta-G solvation = 18.552137 kcal Electronic energy + Delta-G solvation = -15115.629711 eV Core-core repulsion = 12617.725526 eV Total energy + Delta-G solvation = -2497.904184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08838 -35.61846 -34.55754 -32.53200 -31.39612 -29.43010 -26.78193 -25.19282 -24.35198 -21.07672 -19.08293 -17.89793 -17.10254 -16.27912 -15.85039 -14.91858 -14.71015 -14.45255 -14.01608 -13.43846 -13.27648 -12.70674 -12.14512 -12.10387 -11.69533 -11.54348 -11.51437 -11.22168 -11.13282 -10.77702 -10.53389 -10.17721 -9.88987 -9.74062 -9.49988 -9.07161 -8.54616 -7.74862 -7.41168 -6.53358 -4.27994 2.19607 2.61445 3.05258 3.15579 3.18759 3.38027 3.63977 3.71506 4.04616 4.65627 4.79454 5.02333 5.18994 5.27302 5.44771 5.52857 5.65193 5.82673 6.05991 6.15682 6.18962 6.42660 6.57365 6.62877 6.70221 6.95560 7.30695 7.74728 8.17756 8.37582 8.91382 9.27462 9.71357 10.50900 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.010114 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.797025 B = 2767.888585 C = 3721.717160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.155 4.155 3 C 0.210 3.790 4 N -0.432 5.432 5 C -0.345 4.345 6 H 0.092 0.908 7 C 0.047 3.953 8 N -0.862 5.862 9 Si 0.916 3.084 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.489 3.511 14 O -0.595 6.595 15 C -0.093 4.093 16 H 0.104 0.896 17 C -0.123 4.123 18 C -0.060 4.060 19 S -0.320 6.320 20 C -0.031 4.031 21 H 0.208 0.792 22 H 0.127 0.873 23 H 0.082 0.918 24 H 0.273 0.727 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -0.119 5.556 5.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.156 4.156 3 C 0.088 3.912 4 N -0.150 5.150 5 C -0.472 4.472 6 H 0.109 0.891 7 C -0.159 4.159 8 N -0.498 5.498 9 Si 0.742 3.258 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.276 3.724 14 O -0.480 6.480 15 C -0.116 4.116 16 H 0.122 0.878 17 C -0.162 4.162 18 C -0.209 4.209 19 S -0.093 6.093 20 C -0.180 4.180 21 H 0.225 0.775 22 H 0.144 0.856 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.208 -0.128 6.015 6.137 hybrid contribution -1.014 0.545 -0.886 1.452 sum -2.221 0.417 5.129 5.605 Atomic orbital electron populations 1.24611 0.95643 1.04564 1.02635 1.24400 0.95519 0.97257 0.98418 1.18468 0.81388 1.00756 0.90618 1.43289 1.55016 1.08905 1.07746 1.19408 1.36584 0.85006 1.06230 0.89061 1.25413 0.93756 1.00273 0.96473 1.69867 1.29566 1.36325 1.14030 0.86106 0.79122 0.82693 0.77928 1.19917 1.20586 1.19223 1.20173 0.79990 0.85856 0.86424 1.90532 1.55906 1.15894 1.85647 1.21908 0.93966 1.02195 0.93530 0.87767 1.21912 0.99005 1.03325 0.91977 1.23855 0.94507 1.02005 1.00486 1.87561 1.35768 1.75053 1.10954 1.24169 0.97243 1.06227 0.90322 0.77534 0.85550 0.90018 0.91671 0.89243 0.90844 0.89568 0.88852 0.86530 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.96 19.25 29.55 0.57 -4.39 16 2 C -0.15 -3.45 13.62 -37.12 -0.51 -3.95 16 3 C 0.21 4.99 5.39 -6.83 -0.04 4.95 16 4 N -0.43 -10.48 2.48 -117.94 -0.29 -10.77 16 5 C -0.34 -8.30 8.61 -14.94 -0.13 -8.43 16 6 H 0.09 2.11 6.39 -52.49 -0.34 1.78 16 7 C 0.05 1.13 4.99 -17.46 -0.09 1.05 16 8 N -0.86 -21.54 11.47 55.50 0.64 -20.90 16 9 Si 0.92 18.76 29.58 -169.99 -5.03 13.73 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.49 11.37 6.58 -10.98 -0.07 11.30 16 14 O -0.59 -15.10 15.34 5.55 0.09 -15.02 16 15 C -0.09 -1.79 2.31 -90.66 -0.21 -2.00 16 16 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 17 C -0.12 -2.04 5.82 -26.39 -0.15 -2.20 16 18 C -0.06 -0.86 7.38 37.53 0.28 -0.58 16 19 S -0.32 -5.30 23.23 -107.50 -2.50 -7.79 16 20 C -0.03 -0.58 6.84 38.30 0.26 -0.31 16 21 H 0.21 3.03 7.80 -54.09 -0.42 2.61 16 22 H 0.13 3.10 5.65 -51.93 -0.29 2.81 16 23 H 0.08 1.96 7.53 -51.93 -0.39 1.57 16 24 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 25 H 0.09 1.62 6.80 -51.93 -0.35 1.27 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.12 2.21 8.14 -51.93 -0.42 1.79 16 30 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -27.36 273.58 -6.42 -33.78 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.36 Total: 7.43 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.09 Total: -4.57 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.34 Total: -31.67 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.50 Total: -7.79 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.36 -6.42 -33.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.333 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds