Wall clock time and date at job start Sun Mar 29 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99687 * 2 1 4 4 H 1.48504 * 109.46846 * 240.00347 * 3 2 1 5 5 H 1.48497 * 109.47039 * 120.00434 * 3 2 1 6 6 H 1.48499 * 109.47046 * 0.02562 * 3 2 1 7 7 C 1.37871 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99956 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47325 * 175.14324 * 9 7 2 11 11 C 1.47893 * 111.00308 * 175.79006 * 10 9 7 12 12 C 1.53986 * 107.06085 * 214.15908 * 11 10 9 13 13 C 1.54597 * 105.14073 * 1.22325 * 12 11 10 14 14 O 1.42901 * 110.72375 * 263.60338 * 13 12 11 15 15 C 1.52999 * 110.72488 * 140.31685 * 13 12 11 16 16 F 1.39894 * 109.47392 * 61.45384 * 15 13 12 17 17 F 1.39902 * 109.46667 * 181.45708 * 15 13 12 18 18 F 1.39898 * 109.47068 * 301.45309 * 15 13 12 19 19 C 1.48530 * 110.99711 * 58.39164 * 10 9 7 20 20 H 0.97000 * 119.99668 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47404 * 295.14458 * 9 7 2 22 22 H 1.09006 * 109.47065 * 55.15071 * 9 7 2 23 23 H 1.09000 * 109.91469 * 333.51054 * 11 10 9 24 24 H 1.09000 * 109.91838 * 94.60351 * 11 10 9 25 25 H 1.08998 * 110.31103 * 120.13976 * 12 11 10 26 26 H 1.08997 * 110.30975 * 242.20805 * 12 11 10 27 27 H 0.96703 * 113.99587 * 298.53961 * 14 13 12 28 28 H 1.08995 * 110.66977 * 278.15499 * 19 10 9 29 29 H 1.09004 * 110.66850 * 41.28607 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 3.1029 1.6965 1.2124 6 1 1.2840 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2015 -3.6132 -0.1184 11 6 1.5067 -4.9151 -0.0209 12 6 2.4650 -5.8862 0.6930 13 6 3.7222 -5.0472 1.0177 14 8 4.7252 -5.2308 0.0164 15 6 4.2667 -5.4014 2.4029 16 9 4.6385 -6.7498 2.4271 17 9 5.3822 -4.6049 2.6831 18 9 3.2772 -5.1732 3.3652 19 6 3.1844 -3.5943 0.9949 20 1 -0.4850 -0.8401 0.0004 21 1 0.6917 -2.5957 0.9298 22 1 0.5606 -2.5200 -0.8437 23 1 0.5904 -4.8044 0.5589 24 1 1.2721 -5.2864 -1.0185 25 1 2.0113 -6.2588 1.6114 26 1 2.7220 -6.7163 0.0349 27 1 5.0394 -6.1419 -0.0630 28 1 3.9891 -2.8895 0.7858 29 1 2.6937 -3.3510 1.9373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306151912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:00 Heat of formation + Delta-G solvation = -223.422951 kcal Electronic energy + Delta-G solvation = -18167.929179 eV Core-core repulsion = 14674.922556 eV Total energy + Delta-G solvation = -3493.006623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.29561 -48.81000 -48.75487 -40.56100 -37.37063 -35.22163 -32.40878 -30.49358 -28.21250 -26.56392 -24.42666 -22.29999 -22.13976 -20.01896 -19.50009 -19.36281 -18.83856 -17.67067 -16.42026 -15.98453 -15.76336 -15.61080 -15.54106 -15.31999 -15.22921 -15.06597 -14.91678 -14.89249 -14.43685 -13.99600 -13.49488 -13.37572 -13.15891 -12.60459 -12.35949 -12.32334 -12.05623 -11.91983 -11.46511 -10.77543 -10.61779 -9.35097 -8.72070 -6.42839 1.41835 1.53510 1.61389 1.81199 2.43825 2.48669 2.54846 2.67805 3.07385 3.11783 3.26711 3.43351 3.52110 4.03085 4.18446 4.41405 4.51146 4.60275 4.68631 4.76096 4.90119 4.99428 5.60499 5.84037 6.12783 6.31488 6.48079 6.54795 7.37126 8.68326 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.033952 B = 0.007332 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.502247 B = 3818.121110 C = 4138.033491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.032 4.032 3 Si 1.118 2.882 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.054 0.946 9 C 0.184 3.816 10 N -0.512 5.512 11 C 0.029 3.971 12 C -0.138 4.138 13 C 0.097 3.903 14 O -0.521 6.521 15 C 0.438 3.562 16 F -0.171 7.171 17 F -0.182 7.182 18 F -0.182 7.182 19 C 0.066 3.934 20 H 0.255 0.745 21 H -0.034 1.034 22 H 0.009 0.991 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.401 0.599 28 H 0.078 0.922 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.108 -14.416 3.784 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.072 0.928 9 C 0.057 3.943 10 N -0.236 5.236 11 C -0.098 4.098 12 C -0.176 4.176 13 C 0.053 3.947 14 O -0.329 6.329 15 C 0.382 3.618 16 F -0.153 7.153 17 F -0.163 7.163 18 F -0.163 7.163 19 C -0.062 4.062 20 H 0.064 0.936 21 H -0.016 1.016 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.253 0.747 28 H 0.097 0.903 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.084 -12.116 3.212 14.916 hybrid contribution -0.415 -2.255 1.131 2.557 sum 7.669 -14.372 4.343 16.859 Atomic orbital electron populations 1.70933 1.07847 1.29769 1.48598 1.27367 0.96512 1.06590 0.92567 0.82915 0.74107 0.71045 0.78010 1.19564 1.19465 1.20682 1.22309 0.94857 0.92368 1.55079 0.92809 1.19760 0.91262 0.90187 0.93103 1.64718 1.15018 1.02306 1.41600 1.22964 0.96001 0.89460 1.01416 1.23129 0.92803 0.98484 1.03191 1.23078 0.90012 0.98799 0.82822 1.86770 1.56139 1.35734 1.54252 1.21260 0.76079 0.74817 0.89606 1.93184 1.91793 1.33354 1.96949 1.93195 1.54284 1.74083 1.94760 1.93180 1.61915 1.94366 1.66846 1.22904 0.96400 0.92702 0.94222 0.93564 1.01610 0.97311 0.94170 0.89021 0.88508 0.85624 0.74732 0.90318 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.65 21.45 0.29 -57.31 15 2 C -0.03 -1.87 5.46 84.65 0.46 -1.41 15 3 Si 1.12 50.68 29.90 68.60 2.05 52.74 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 7 C -0.61 -35.02 8.68 25.60 0.22 -34.80 15 8 H 0.05 3.08 6.72 -2.91 -0.02 3.06 15 9 C 0.18 9.70 3.95 85.56 0.34 10.04 15 10 N -0.51 -22.18 5.34 -887.61 -4.74 -26.92 15 11 C 0.03 0.96 6.70 86.45 0.58 1.54 15 12 C -0.14 -3.31 6.00 31.47 0.19 -3.12 15 13 C 0.10 2.78 0.82 -9.59 -0.01 2.77 15 14 O -0.52 -13.82 13.06 -148.98 -1.95 -15.76 15 15 C 0.44 11.63 2.42 71.98 0.17 11.80 15 16 F -0.17 -3.75 16.91 44.97 0.76 -2.99 15 17 F -0.18 -5.37 17.14 44.97 0.77 -4.60 15 18 F -0.18 -5.19 15.78 44.97 0.71 -4.48 15 19 C 0.07 2.60 4.72 86.65 0.41 3.01 15 20 H 0.26 15.85 7.19 -92.71 -0.67 15.18 15 21 H -0.03 -1.85 7.97 -2.39 -0.02 -1.87 15 22 H 0.01 0.50 7.82 -2.38 -0.02 0.48 15 23 H 0.04 1.35 7.67 -2.39 -0.02 1.33 15 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.10 2.05 7.35 -2.39 -0.02 2.04 15 26 H 0.13 2.13 8.08 -2.39 -0.02 2.11 15 27 H 0.40 6.15 8.90 -74.06 -0.66 5.49 15 28 H 0.08 3.42 7.28 -2.39 -0.02 3.40 15 29 H 0.05 2.20 7.23 -2.39 -0.02 2.19 15 Total: -1.00 -67.66 256.22 0.89 -66.77 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 0.63 Total: 2.73 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 2.37 Total: -10.17 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -4.45 Total: -84.24 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.95 Total: -15.76 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.24 Total: -12.07 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.74 kcal Total: -67.66 0.89 -66.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306151912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.651 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds