Wall clock time and date at job start Sun Mar 29 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30121 * 121.05632 * 2 1 4 4 S 1.69958 * 105.76226 * 179.97438 * 3 2 1 5 5 C 1.72299 * 94.57132 * 359.97438 * 4 3 2 6 6 N 1.38324 * 127.50033 * 180.02562 * 5 4 3 7 7 C 1.46500 * 120.00062 * 359.96790 * 6 5 4 8 8 C 1.52999 * 109.47010 * 181.57579 * 7 6 5 9 9 C 1.50695 * 115.54802 * 39.68779 * 8 7 6 10 10 H 1.08004 * 120.00225 * 264.51006 * 9 8 7 11 11 C 1.37883 * 120.00403 * 84.51297 * 9 8 7 12 12 N 1.31513 * 119.99603 * 352.97339 * 11 9 8 13 13 Si 1.86792 * 120.00294 * 172.97294 * 11 9 8 14 14 H 1.48502 * 109.47108 * 60.00004 * 13 11 9 15 15 H 1.48497 * 109.47068 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47266 * 300.00172 * 13 11 9 17 17 C 1.52998 * 117.50114 * 253.97647 * 8 7 6 18 18 C 1.52998 * 117.49670 * 185.35376 * 8 7 6 19 19 N 1.31288 * 121.06463 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.46996 * 90.03228 * 1 2 3 21 21 H 1.09005 * 109.46826 * 210.02412 * 1 2 3 22 22 H 1.08999 * 109.47419 * 330.02694 * 1 2 3 23 23 H 0.97000 * 119.99833 * 179.97438 * 6 5 4 24 24 H 1.08997 * 109.47088 * 301.58332 * 7 6 5 25 25 H 1.09004 * 109.46486 * 61.57751 * 7 6 5 26 26 H 0.96998 * 120.00054 * 185.03728 * 12 11 9 27 27 H 1.09000 * 117.49502 * 0.02562 * 17 8 7 28 28 H 1.08998 * 117.49787 * 145.02237 * 17 8 7 29 29 H 1.09002 * 117.49528 * 214.98386 * 18 8 7 30 30 H 1.08997 * 117.50287 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1783 1.1147 0.0000 4 16 3.8177 0.6664 0.0007 5 6 3.4971 -1.0265 0.0018 6 7 4.4187 -2.0581 0.0032 7 6 5.8529 -1.7591 0.0033 8 6 6.6464 -3.0666 -0.0347 9 6 6.0843 -4.1422 -0.9280 10 1 5.4458 -4.9088 -0.5143 11 6 6.3852 -4.1480 -2.2736 12 7 7.0464 -3.1423 -2.8038 13 14 5.8539 -5.5840 -3.3435 14 1 4.3745 -5.7083 -3.3062 15 1 6.2953 -5.3494 -4.7418 16 1 6.4687 -6.8357 -2.8331 17 6 7.3400 -3.5098 1.2550 18 6 8.1687 -2.9728 0.0863 19 7 2.1845 -1.1246 0.0005 20 1 -0.3633 -0.0006 -1.0276 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.1153 -2.9794 0.0040 24 1 6.0989 -1.1590 -0.8728 25 1 6.1083 -1.2050 0.9066 26 1 7.1945 -3.1105 -3.7618 27 1 7.2307 -2.8700 2.1306 28 1 7.3898 -4.5796 1.4576 29 1 8.7636 -3.6894 -0.4800 30 1 8.6049 -1.9796 0.1925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306947176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:57 Heat of formation + Delta-G solvation = 55.737301 kcal Electronic energy + Delta-G solvation = -14596.419732 eV Core-core repulsion = 12132.420769 eV Total energy + Delta-G solvation = -2463.998963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.00724 -39.05774 -36.40859 -34.05039 -32.59145 -30.45265 -28.06131 -27.18628 -24.19322 -22.90083 -21.76253 -20.58253 -19.68829 -18.00841 -17.82044 -16.78393 -16.56840 -16.17346 -15.34339 -14.97803 -14.77416 -14.45837 -13.60986 -13.46514 -13.38939 -13.00802 -12.85486 -12.64630 -12.44646 -12.42562 -12.10878 -11.86948 -11.50922 -10.90589 -10.58669 -10.50458 -10.38185 -10.00956 -8.99852 -8.16365 -6.28752 -0.15452 0.08508 0.92368 1.40512 1.43570 1.48010 1.78007 1.95178 2.39000 3.12414 3.39723 3.53644 4.11506 4.40815 4.43043 4.55338 4.62741 4.68852 4.74161 4.87472 4.92510 5.02793 5.21794 5.25685 5.40529 5.63292 5.71959 5.80134 6.29181 6.37701 6.77990 6.88984 7.41986 8.90170 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.025797 B = 0.007414 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.152116 B = 3775.696552 C = 4365.579643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.298 3.702 3 N -0.539 5.539 4 S 0.158 5.842 5 C 0.345 3.655 6 N -0.625 5.625 7 C 0.168 3.832 8 C 0.000 4.000 9 C -0.512 4.512 10 H 0.059 0.941 11 C 0.038 3.962 12 N -0.897 5.897 13 Si 0.940 3.060 14 H -0.275 1.275 15 H -0.290 1.290 16 H -0.272 1.272 17 C -0.182 4.182 18 C -0.152 4.152 19 N -0.620 5.620 20 H 0.098 0.902 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.419 0.581 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.261 0.739 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 3.945 5.701 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.009 3.991 3 N -0.375 5.375 4 S 0.290 5.710 5 C -0.034 4.034 6 N -0.259 5.259 7 C 0.045 3.955 8 C -0.001 4.001 9 C -0.550 4.550 10 H 0.077 0.923 11 C -0.164 4.164 12 N -0.533 5.533 13 Si 0.766 3.234 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.197 1.197 17 C -0.219 4.219 18 C -0.190 4.190 19 N -0.359 5.359 20 H 0.116 0.884 21 H 0.116 0.884 22 H 0.118 0.882 23 H 0.259 0.741 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.427 5.196 5.534 9.331 hybrid contribution -0.447 -1.993 -1.038 2.291 sum -5.873 3.203 4.496 8.060 Atomic orbital electron populations 1.20534 0.81348 1.05239 1.05065 1.23914 1.01296 0.81915 0.91956 1.77461 0.97289 1.25782 1.36977 1.84737 1.13764 0.98458 1.74004 1.25441 0.90473 0.95843 0.91688 1.44364 1.04002 1.05967 1.71598 1.21156 0.76445 0.98126 0.99804 1.18986 0.91720 0.93319 0.96081 1.20527 1.31083 1.10668 0.92677 0.92292 1.25543 0.94338 0.97340 0.99217 1.70027 1.40352 1.31074 1.11848 0.85901 0.78642 0.80897 0.77937 1.20053 1.21592 1.19672 1.23131 1.06229 1.00579 0.91959 1.22470 0.94933 1.00360 1.01261 1.67440 1.03191 1.30632 1.34661 0.88356 0.88444 0.88227 0.74090 0.92800 0.91209 0.93013 0.88585 0.90110 0.91914 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.32 10.42 71.24 0.74 -0.58 16 2 C 0.30 9.86 7.56 139.40 1.05 10.91 16 3 N -0.54 -18.95 12.15 -60.46 -0.73 -19.68 16 4 S 0.16 5.54 23.17 -56.49 -1.31 4.23 16 5 C 0.35 13.06 8.57 178.86 1.53 14.59 16 6 N -0.62 -24.10 5.47 -348.70 -1.91 -26.01 16 7 C 0.17 6.55 5.81 86.38 0.50 7.05 16 8 C 0.00 -0.01 1.70 -52.93 -0.09 -0.10 16 9 C -0.51 -24.60 7.44 25.60 0.19 -24.41 16 10 H 0.06 2.81 7.82 -2.91 -0.02 2.79 16 11 C 0.04 1.91 5.39 84.66 0.46 2.37 16 12 N -0.90 -47.30 12.97 21.45 0.28 -47.02 16 13 Si 0.94 40.93 29.55 68.60 2.03 42.95 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 C -0.18 -6.61 9.88 30.59 0.30 -6.31 16 18 C -0.15 -6.20 9.51 30.59 0.29 -5.90 16 19 N -0.62 -23.01 10.61 -200.04 -2.12 -25.14 16 20 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.42 16.64 7.59 -92.71 -0.70 15.94 16 24 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 2.37 7.95 -2.39 -0.02 2.35 16 26 H 0.26 13.47 8.32 -92.71 -0.77 12.70 16 27 H 0.10 2.97 8.08 -2.39 -0.02 2.95 16 28 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -55.46 278.27 1.66 -53.80 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.45 Total: 19.25 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.98 Total: -2.39 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.49 Total: -117.85 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.31 Total: 4.23 kcal Total: -55.46 1.66 -53.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306947176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.539 kcal (2) G-P(sol) polarization free energy of solvation -55.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds