Wall clock time and date at job start Sun Mar 29 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 119.99858 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.38701 * 119.99733 * 179.72412 * 11 10 9 13 13 N 1.30245 * 126.16831 * 359.96912 * 12 11 10 14 14 N 1.26104 * 117.61876 * 179.75890 * 13 12 11 15 15 C 1.29325 * 117.96730 * 0.55340 * 14 13 12 16 16 C 1.50699 * 126.06199 * 179.72975 * 15 14 13 17 17 C 1.53005 * 117.49783 * 8.59439 * 16 15 14 18 18 C 1.52999 * 59.99936 * 252.51159 * 17 16 15 19 19 S 1.76480 * 107.87161 * 359.70889 * 15 14 13 20 20 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 22 22 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 23 23 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 24 24 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 25 25 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 26 26 H 1.08995 * 115.54946 * 154.31141 * 16 15 14 27 27 H 1.08999 * 117.50128 * 0.02562 * 17 16 15 28 28 H 1.09006 * 117.48961 * 145.02516 * 17 16 15 29 29 H 1.08997 * 117.49769 * 252.50733 * 18 17 16 30 30 H 1.08998 * 117.51129 * 107.48885 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.2060 -6.1320 -0.0025 13 7 3.5009 -6.2720 -0.0101 14 7 3.9620 -7.4457 -0.0097 15 6 3.1207 -8.4278 -0.0128 16 6 3.4688 -9.8941 -0.0187 17 6 4.9378 -10.2722 0.1815 18 6 4.2908 -10.4203 -1.1970 19 16 1.4927 -7.7465 -0.0083 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6246 -2.5562 0.8919 23 1 2.8724 -3.6040 0.8910 24 1 2.8711 -3.6048 -0.8890 25 1 0.5425 -4.9308 0.0039 26 1 2.7155 -10.5578 0.4057 27 1 5.6524 -9.4605 0.3179 28 1 5.1511 -11.1849 0.7380 29 1 4.0786 -11.4303 -1.5474 30 1 4.5795 -9.7061 -1.9680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308524305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:30 Heat of formation + Delta-G solvation = 77.698973 kcal Electronic energy + Delta-G solvation = -13821.742819 eV Core-core repulsion = 11358.696185 eV Total energy + Delta-G solvation = -2463.046634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63811 -37.43035 -36.19006 -33.19725 -30.66651 -29.10779 -26.05390 -24.66804 -22.61604 -22.51611 -21.34367 -19.23771 -18.62911 -16.87529 -16.19461 -16.13888 -15.47681 -14.76945 -14.42648 -13.94524 -13.83157 -13.24848 -12.43214 -12.26159 -11.76745 -11.61120 -11.33667 -11.06094 -10.85215 -10.69884 -10.68497 -10.17074 -9.91655 -9.76612 -9.66734 -9.39307 -9.29051 -8.50227 -7.68013 -6.15786 -4.19508 0.85628 0.91429 1.50811 2.94788 3.28112 3.31927 3.33529 3.42908 3.74713 4.30326 4.38239 4.68456 4.73913 4.86671 5.19085 5.21527 5.47298 5.61516 5.74111 5.92725 6.02961 6.07392 6.18198 6.58717 6.97890 7.44340 7.48798 7.51097 7.82006 8.18892 8.85622 9.07255 9.45827 10.95765 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.063820 B = 0.004042 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.629438 B = 6924.810004 C = 7271.301316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.130 3.870 11 N -0.666 5.666 12 C 0.319 3.681 13 N -0.350 5.350 14 N -0.220 5.220 15 C 0.012 3.988 16 C -0.076 4.076 17 C -0.153 4.153 18 C -0.161 4.161 19 S -0.001 6.001 20 H 0.264 0.736 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.416 0.584 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 -19.089 -0.406 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.006 3.994 11 N -0.301 5.301 12 C -0.054 4.054 13 N -0.199 5.199 14 N -0.053 5.053 15 C -0.273 4.273 16 C -0.099 4.099 17 C -0.192 4.192 18 C -0.199 4.199 19 S 0.237 5.763 20 H 0.073 0.927 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.253 0.747 26 H 0.142 0.858 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.167 -18.552 -0.398 18.825 hybrid contribution -0.230 1.014 0.024 1.040 sum 2.938 -17.538 -0.374 17.786 Atomic orbital electron populations 1.69943 1.06134 1.27158 1.49967 1.24995 0.94914 0.99493 0.94802 0.86531 0.79497 0.82433 0.78863 1.20029 1.21201 1.20022 1.20954 0.93264 0.90088 1.51943 0.92109 1.19348 0.94201 0.90857 0.98088 1.22019 0.96141 0.79782 1.01447 1.44744 1.08731 1.01421 1.75254 1.26994 0.91372 0.91138 0.95922 1.71391 1.06590 1.13021 1.28891 1.70567 1.30296 0.93287 1.11192 1.27974 0.88412 0.99222 1.11706 1.20161 0.96378 0.87412 1.05934 1.23036 0.93709 1.03379 0.99094 1.23072 1.02666 1.02252 0.91956 1.85635 1.12092 1.01556 1.77050 0.92673 0.95757 0.95738 0.91886 0.91892 0.74698 0.85804 0.87407 0.88088 0.88021 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.13 2.66 5.95 -4.04 -0.02 2.63 16 11 N -0.67 -11.58 5.72 -60.63 -0.35 -11.93 16 12 C 0.32 5.52 8.51 -87.14 -0.74 4.78 16 13 N -0.35 -6.71 11.24 31.00 0.35 -6.36 16 14 N -0.22 -3.81 11.13 33.57 0.37 -3.44 16 15 C 0.01 0.17 7.32 -13.33 -0.10 0.08 16 16 C -0.08 -0.78 6.33 -91.77 -0.58 -1.37 16 17 C -0.15 -1.39 10.14 -26.73 -0.27 -1.66 16 18 C -0.16 -1.41 10.23 -26.73 -0.27 -1.68 16 19 S 0.00 -0.02 23.54 -107.50 -2.53 -2.55 16 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 21 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.42 6.36 8.60 -40.82 -0.35 6.01 16 26 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.11 1.16 7.90 -51.93 -0.41 0.75 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -30.09 281.60 -8.42 -38.51 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.68 Total: 0.50 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.54 Total: -10.04 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.11 Total: -46.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.53 Total: -2.55 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.09 -8.42 -38.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308524305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.211 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds