Wall clock time and date at job start Sun Mar 29 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 119.99858 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.38701 * 119.99733 * 179.72412 * 11 10 9 13 13 N 1.30245 * 126.16831 * 359.96912 * 12 11 10 14 14 N 1.26104 * 117.61876 * 179.75890 * 13 12 11 15 15 C 1.29325 * 117.96730 * 0.55340 * 14 13 12 16 16 C 1.50699 * 126.06199 * 179.72975 * 15 14 13 17 17 C 1.53005 * 117.49783 * 8.59439 * 16 15 14 18 18 C 1.52999 * 59.99936 * 252.51159 * 17 16 15 19 19 S 1.76480 * 107.87161 * 359.70889 * 15 14 13 20 20 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 22 22 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 23 23 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 24 24 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 25 25 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 26 26 H 1.08995 * 115.54946 * 154.31141 * 16 15 14 27 27 H 1.08999 * 117.50128 * 0.02562 * 17 16 15 28 28 H 1.09006 * 117.48961 * 145.02516 * 17 16 15 29 29 H 1.08997 * 117.49769 * 252.50733 * 18 17 16 30 30 H 1.08998 * 117.51129 * 107.48885 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.2060 -6.1320 -0.0025 13 7 3.5009 -6.2720 -0.0101 14 7 3.9620 -7.4457 -0.0097 15 6 3.1207 -8.4278 -0.0128 16 6 3.4688 -9.8941 -0.0187 17 6 4.9378 -10.2722 0.1815 18 6 4.2908 -10.4203 -1.1970 19 16 1.4927 -7.7465 -0.0083 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6246 -2.5562 0.8919 23 1 2.8724 -3.6040 0.8910 24 1 2.8711 -3.6048 -0.8890 25 1 0.5425 -4.9308 0.0039 26 1 2.7155 -10.5578 0.4057 27 1 5.6524 -9.4605 0.3179 28 1 5.1511 -11.1849 0.7380 29 1 4.0786 -11.4303 -1.5474 30 1 4.5795 -9.7061 -1.9680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308524305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:30 Heat of formation + Delta-G solvation = 59.089255 kcal Electronic energy + Delta-G solvation = -13822.549797 eV Core-core repulsion = 11358.696185 eV Total energy + Delta-G solvation = -2463.853612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.90689 -38.39369 -37.54205 -35.16681 -32.33100 -30.56477 -27.52058 -26.29134 -23.87818 -23.22822 -22.97225 -20.49682 -19.88422 -18.57108 -17.79249 -17.15259 -16.81214 -16.46531 -15.80317 -15.55345 -15.03822 -14.42192 -14.28099 -13.34832 -13.28519 -13.19544 -12.70490 -12.55366 -12.34540 -12.07160 -11.76126 -11.62451 -11.48050 -11.33759 -11.24667 -10.87248 -10.60324 -10.38790 -9.03114 -8.26755 -6.37516 -0.36589 -0.28734 0.30887 1.41422 1.43531 1.51527 1.69416 2.07745 2.41146 2.96338 3.08555 3.30717 3.83628 3.95100 3.99318 4.12978 4.33689 4.42126 4.68216 4.78605 4.83593 5.00247 5.18369 5.29113 5.32956 5.51686 5.58597 5.78984 6.06693 6.26354 6.75840 7.32014 7.81735 8.85057 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.063820 B = 0.004042 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.629438 B = 6924.810004 C = 7271.301316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.155 3.845 11 N -0.669 5.669 12 C 0.291 3.709 13 N -0.385 5.385 14 N -0.258 5.258 15 C 0.025 3.975 16 C -0.096 4.096 17 C -0.149 4.149 18 C -0.148 4.148 19 S 0.066 5.934 20 H 0.266 0.734 21 H 0.009 0.991 22 H 0.010 0.990 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.424 0.576 26 H 0.154 0.846 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -21.036 -0.416 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.015 4.015 10 C 0.030 3.970 11 N -0.307 5.307 12 C -0.082 4.082 13 N -0.233 5.233 14 N -0.091 5.091 15 C -0.261 4.261 16 C -0.118 4.118 17 C -0.188 4.188 18 C -0.187 4.187 19 S 0.305 5.695 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.263 0.737 26 H 0.172 0.828 27 H 0.103 0.897 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.423 -20.534 -0.409 20.821 hybrid contribution -0.306 1.395 0.017 1.428 sum 3.117 -19.139 -0.391 19.395 Atomic orbital electron populations 1.70052 1.07588 1.28150 1.50837 1.25872 0.95784 1.03137 0.94316 0.85485 0.78288 0.78033 0.79190 1.19287 1.20636 1.19275 1.21401 0.93686 0.91654 1.51812 0.92028 1.19141 0.94271 0.91608 0.96511 1.21407 0.94853 0.80289 1.00436 1.44306 1.08835 1.00765 1.76832 1.27060 0.91764 0.92445 0.96962 1.71340 1.08059 1.14622 1.29270 1.70565 1.31128 0.93394 1.14003 1.28890 0.88745 1.00685 1.07740 1.20581 0.98028 0.85249 1.07949 1.23110 0.92102 1.03775 0.99804 1.23159 1.01099 1.03271 0.91121 1.85377 1.10564 0.97891 1.75645 0.92488 0.97222 0.97195 0.92905 0.92923 0.73686 0.82811 0.89716 0.85046 0.84744 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.29 9.11 25.60 0.23 -30.05 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C 0.16 6.57 5.95 86.38 0.51 7.08 16 11 N -0.67 -23.69 5.72 -345.74 -1.98 -25.66 16 12 C 0.29 10.06 8.51 179.13 1.52 11.59 16 13 N -0.38 -14.97 11.24 -55.84 -0.63 -15.59 16 14 N -0.26 -8.93 11.13 -47.71 -0.53 -9.46 16 15 C 0.03 0.67 7.32 88.48 0.65 1.32 16 16 C -0.10 -1.68 6.33 -11.54 -0.07 -1.75 16 17 C -0.15 -2.31 10.14 30.60 0.31 -2.00 16 18 C -0.15 -2.15 10.23 30.59 0.31 -1.83 16 19 S 0.07 1.69 23.54 -56.49 -1.33 0.36 16 20 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 21 H 0.01 0.49 8.14 -2.38 -0.02 0.48 16 22 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.42 13.16 8.60 -92.71 -0.80 12.36 16 26 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 1.75 7.90 -2.39 -0.02 1.73 16 28 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.67 281.60 2.29 -63.38 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.36 Total: 8.92 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.08 Total: -13.48 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -2.85 Total: -104.63 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.33 Total: 0.36 kcal Total: -65.67 2.29 -63.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308524305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.470 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds