Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.46496 * 120.00288 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.46875 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00315 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99783 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00031 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00064 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47279 * 89.99606 * 12 10 8 14 14 H 1.48497 * 109.47015 * 209.99889 * 12 10 8 15 15 H 1.48501 * 109.47193 * 329.99628 * 12 10 8 16 16 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 17 17 C 1.33388 * 125.19940 * 120.00096 * 16 2 1 18 18 C 1.38433 * 114.91766 * 179.97438 * 17 16 2 19 19 C 1.33389 * 114.92022 * 0.02562 * 18 17 16 20 20 S 1.75879 * 125.20222 * 299.97622 * 16 2 1 21 21 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 22 22 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 23 23 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 24 24 H 0.97007 * 119.99248 * 359.97438 * 6 4 2 25 25 H 1.08998 * 109.46977 * 300.00122 * 7 6 4 26 26 H 1.09004 * 109.47051 * 59.99952 * 7 6 4 27 27 H 0.96998 * 119.99819 * 179.97438 * 11 10 8 28 28 H 1.08000 * 122.54563 * 359.95533 * 17 16 2 29 29 H 1.07998 * 122.53579 * 180.02562 * 18 17 16 30 30 H 1.07995 * 125.20209 * 180.26467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 2.1956 -0.9405 3.6507 8 6 1.6937 -0.2298 4.8811 9 1 1.0724 0.6480 4.7821 10 6 2.0277 -0.7003 6.1334 11 7 2.7839 -1.7696 6.2540 12 14 1.4050 0.1801 7.6587 13 1 0.0975 -0.3957 8.0635 14 1 2.3838 0.0103 8.7624 15 1 1.2388 1.6258 7.3626 16 6 2.0323 -0.7104 -1.2305 17 6 2.8024 -0.1645 -2.1730 18 6 3.1404 -1.0127 -3.2135 19 6 2.6442 -2.2470 -3.1163 20 16 1.6932 -2.3861 -1.6432 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.1494 0.5388 2.5436 25 1 1.8327 -1.9683 3.6508 26 1 3.2856 -0.9401 3.6505 27 1 3.0192 -2.1004 7.1350 28 1 3.1367 0.8614 -2.1279 29 1 3.7589 -0.6987 -4.0413 30 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331156239.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = -16.506458 kcal Electronic energy + Delta-G solvation = -14373.377789 eV Core-core repulsion = 11873.953350 eV Total energy + Delta-G solvation = -2499.424439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.24120 -37.44129 -34.20335 -33.67952 -32.21684 -28.54908 -27.18202 -24.66130 -23.35381 -21.98238 -19.62608 -19.20407 -17.53043 -16.47164 -15.75229 -15.38349 -15.03177 -14.56698 -14.20890 -13.42074 -13.13860 -12.84928 -12.55797 -12.19975 -12.11663 -11.94120 -11.72457 -11.50122 -11.27540 -10.98009 -10.88286 -10.42995 -10.31487 -9.40604 -9.10201 -8.74335 -8.45806 -8.15858 -7.88374 -6.17247 -4.24377 1.18173 1.86886 2.26872 2.88430 3.23686 3.29871 3.32194 3.34123 4.09658 4.37145 4.68627 5.13867 5.18329 5.19439 5.21463 5.48007 5.64325 5.68751 5.76760 5.88776 6.14396 6.24804 6.43693 6.62706 7.29867 7.41935 7.51166 7.65241 7.96197 8.60520 8.76620 9.07564 9.42279 10.92950 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054684 B = 0.004975 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.910250 B = 5626.762417 C = 5817.810058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 H 0.108 0.892 4 C 0.499 3.501 5 O -0.542 6.542 6 N -0.709 5.709 7 C 0.250 3.750 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.234 4.234 20 S 0.143 5.857 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.390 0.610 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 3.927 -16.033 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 H 0.126 0.874 4 C 0.282 3.718 5 O -0.420 6.420 6 N -0.358 5.358 7 C 0.129 3.871 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.262 4.262 17 C -0.180 4.180 18 C -0.167 4.167 19 C -0.370 4.370 20 S 0.408 5.592 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.223 0.777 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.216 1.888 -15.260 15.944 hybrid contribution 0.438 1.916 0.277 1.985 sum -3.777 3.804 -14.983 15.913 Atomic orbital electron populations 1.21825 0.92094 1.03085 1.02914 1.19917 0.97410 0.99852 0.89880 0.87368 1.20255 0.81552 0.85299 0.84723 1.90696 1.38263 1.26447 1.86628 1.46427 1.51751 1.31231 1.06355 1.19112 0.95311 0.92870 0.79765 1.21220 1.33189 1.13198 0.90568 0.91896 1.24954 0.94816 0.94988 0.99239 1.69980 1.35608 1.22485 1.24199 0.86414 0.78605 0.79826 0.82062 1.20450 1.21001 1.19740 1.24001 1.04945 0.97455 0.99803 1.20019 1.01302 1.01512 0.95129 1.20020 1.03072 0.93262 1.00359 1.25667 1.07306 1.01401 1.02609 1.84341 1.49513 1.09911 1.15388 0.91055 0.91431 0.91954 0.77698 0.95511 0.95542 0.92438 0.84690 0.84831 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.01 37.15 0.33 -1.38 16 2 C -0.05 -0.69 3.10 -92.92 -0.29 -0.98 16 3 H 0.11 1.35 8.08 -51.93 -0.42 0.93 16 4 C 0.50 9.99 7.12 -10.98 -0.08 9.91 16 5 O -0.54 -13.09 15.25 5.56 0.08 -13.01 16 6 N -0.71 -14.83 5.44 -61.47 -0.33 -15.17 16 7 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 8 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 9 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 C -0.14 -2.17 4.60 -36.00 -0.17 -2.34 16 17 C -0.15 -2.00 10.01 -41.20 -0.41 -2.42 16 18 C -0.14 -1.68 10.18 -41.20 -0.42 -2.10 16 19 C -0.23 -2.96 11.23 29.04 0.33 -2.63 16 20 S 0.14 2.15 22.18 -107.50 -2.38 -0.24 16 21 H 0.07 0.80 7.57 -51.93 -0.39 0.40 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.82 8.00 -51.93 -0.42 0.40 16 24 H 0.39 6.92 7.74 -40.82 -0.32 6.61 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -32.11 278.34 -7.49 -39.60 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.61 Total: 2.93 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.15 Total: -8.67 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.40 Total: -40.56 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.24 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.11 -7.49 -39.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331156239.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.094 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds