Wall clock time and date at job start Sun Mar 29 2020 22:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.46496 * 120.00288 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.46875 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00315 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99783 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00031 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00064 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47279 * 89.99606 * 12 10 8 14 14 H 1.48497 * 109.47015 * 209.99889 * 12 10 8 15 15 H 1.48501 * 109.47193 * 329.99628 * 12 10 8 16 16 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 17 17 C 1.33388 * 125.19940 * 120.00096 * 16 2 1 18 18 C 1.38433 * 114.91766 * 179.97438 * 17 16 2 19 19 C 1.33389 * 114.92022 * 0.02562 * 18 17 16 20 20 S 1.75879 * 125.20222 * 299.97622 * 16 2 1 21 21 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 22 22 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 23 23 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 24 24 H 0.97007 * 119.99248 * 359.97438 * 6 4 2 25 25 H 1.08998 * 109.46977 * 300.00122 * 7 6 4 26 26 H 1.09004 * 109.47051 * 59.99952 * 7 6 4 27 27 H 0.96998 * 119.99819 * 179.97438 * 11 10 8 28 28 H 1.08000 * 122.54563 * 359.95533 * 17 16 2 29 29 H 1.07998 * 122.53579 * 180.02562 * 18 17 16 30 30 H 1.07995 * 125.20209 * 180.26467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 2.1956 -0.9405 3.6507 8 6 1.6937 -0.2298 4.8811 9 1 1.0724 0.6480 4.7821 10 6 2.0277 -0.7003 6.1334 11 7 2.7839 -1.7696 6.2540 12 14 1.4050 0.1801 7.6587 13 1 0.0975 -0.3957 8.0635 14 1 2.3838 0.0103 8.7624 15 1 1.2388 1.6258 7.3626 16 6 2.0323 -0.7104 -1.2305 17 6 2.8024 -0.1645 -2.1730 18 6 3.1404 -1.0127 -3.2135 19 6 2.6442 -2.2470 -3.1163 20 16 1.6932 -2.3861 -1.6432 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.1494 0.5388 2.5436 25 1 1.8327 -1.9683 3.6508 26 1 3.2856 -0.9401 3.6505 27 1 3.0192 -2.1004 7.1350 28 1 3.1367 0.8614 -2.1279 29 1 3.7589 -0.6987 -4.0413 30 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331156239.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:55 Heat of formation + Delta-G solvation = -38.232576 kcal Electronic energy + Delta-G solvation = -14374.319904 eV Core-core repulsion = 11873.953350 eV Total energy + Delta-G solvation = -2500.366554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80651 -38.56339 -36.14877 -34.98160 -34.13507 -29.79998 -28.98009 -25.89870 -24.92327 -23.52334 -21.27397 -20.22048 -19.14630 -17.97667 -17.36826 -16.92965 -16.49103 -16.18164 -15.80323 -14.81101 -14.62059 -14.07196 -14.03442 -13.74309 -13.54044 -13.15500 -13.08315 -12.91125 -12.72270 -12.54068 -12.39341 -12.21912 -11.50597 -11.47375 -10.80392 -10.72500 -9.83526 -9.53464 -9.27599 -8.29213 -6.46043 0.13326 0.81098 1.23571 1.43503 1.45901 1.57139 1.74401 1.87631 2.33688 2.63521 3.05863 3.56551 3.92120 4.10857 4.26661 4.34279 4.67485 4.73421 4.83472 4.87116 5.11252 5.19215 5.23236 5.25609 5.41916 5.48308 5.65861 5.68961 5.84500 6.65000 6.89131 7.23252 7.47599 8.83068 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054684 B = 0.004975 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.910250 B = 5626.762417 C = 5817.810058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 H 0.140 0.860 4 C 0.494 3.506 5 O -0.588 6.588 6 N -0.703 5.703 7 C 0.268 3.732 8 C -0.555 4.555 9 H 0.085 0.915 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.254 1.254 16 C -0.169 4.169 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.223 4.223 20 S 0.076 5.924 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.044 0.956 24 H 0.409 0.591 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.268 0.732 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 6.444 -17.002 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 H 0.158 0.842 4 C 0.280 3.720 5 O -0.469 6.469 6 N -0.353 5.353 7 C 0.145 3.855 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.808 3.192 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.178 1.178 16 C -0.287 4.287 17 C -0.172 4.172 18 C -0.171 4.171 19 C -0.359 4.359 20 S 0.341 5.659 21 H 0.101 0.899 22 H 0.115 0.885 23 H 0.064 0.936 24 H 0.245 0.755 25 H 0.003 0.997 26 H 0.004 0.996 27 H 0.077 0.923 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.038 4.445 -16.268 17.600 hybrid contribution 0.756 1.089 0.455 1.401 sum -4.282 5.534 -15.812 17.291 Atomic orbital electron populations 1.21847 0.90059 1.02672 1.04912 1.19896 0.98949 1.00265 0.86496 0.84233 1.21313 0.80213 0.84698 0.85774 1.90671 1.40215 1.28650 1.87399 1.46146 1.52174 1.31637 1.05386 1.18526 0.92799 0.91647 0.82554 1.21620 1.33233 1.13745 0.90677 0.89662 1.26079 0.94700 0.95616 1.03214 1.70148 1.37220 1.24500 1.25230 0.85149 0.77864 0.79224 0.76937 1.19614 1.21058 1.17757 1.24106 1.06870 0.97008 1.00742 1.20442 0.99496 1.02783 0.94528 1.20426 1.02930 0.92802 1.00929 1.25981 1.06069 1.02469 1.01364 1.84570 1.51504 1.11773 1.18085 0.89928 0.88486 0.93637 0.75528 0.99651 0.99628 0.92284 0.82163 0.81588 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.01 71.98 0.65 -2.42 16 2 C -0.03 -0.93 3.10 -12.29 -0.04 -0.96 16 3 H 0.14 3.01 8.08 -2.39 -0.02 2.99 16 4 C 0.49 20.03 7.12 87.66 0.62 20.66 16 5 O -0.59 -29.66 15.25 -3.03 -0.05 -29.70 16 6 N -0.70 -29.73 5.44 -466.79 -2.54 -32.27 16 7 C 0.27 14.81 5.43 85.63 0.46 15.27 16 8 C -0.56 -30.14 9.28 25.60 0.24 -29.90 16 9 H 0.09 4.15 7.60 -2.91 -0.02 4.12 16 10 C 0.00 0.19 5.46 84.65 0.46 0.65 16 11 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 12 Si 0.99 42.20 29.54 68.60 2.03 44.22 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 16 C -0.17 -4.89 4.60 24.59 0.11 -4.78 16 17 C -0.14 -3.42 10.01 21.22 0.21 -3.20 16 18 C -0.14 -3.06 10.18 21.22 0.22 -2.84 16 19 C -0.22 -5.25 11.23 66.72 0.75 -4.50 16 20 S 0.08 2.30 22.18 -56.49 -1.25 1.05 16 21 H 0.08 1.64 7.57 -2.38 -0.02 1.62 16 22 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 24 H 0.41 14.02 7.74 -92.70 -0.72 13.31 16 25 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -72.90 278.34 2.59 -70.31 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.43 Total: 14.76 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.69 Total: -12.03 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.25 Total: -88.62 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.25 Total: 1.05 kcal Total: -72.90 2.59 -70.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331156239.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.082 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds