Wall clock time and date at job start Sun Mar 29 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.50706 * 109.47174 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99324 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00250 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00091 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00065 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46927 * 89.99821 * 12 10 8 14 14 H 1.48498 * 109.47123 * 209.99895 * 12 10 8 15 15 H 1.48503 * 109.47167 * 329.99632 * 12 10 8 16 16 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 17 17 C 1.33386 * 125.20506 * 240.00294 * 16 2 1 18 18 C 1.38423 * 114.91934 * 179.97438 * 17 16 2 19 19 C 1.33382 * 114.92452 * 359.97438 * 18 17 16 20 20 S 1.75887 * 109.59293 * 359.75798 * 19 18 17 21 21 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 25 25 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 26 26 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 27 27 H 0.97004 * 120.00400 * 180.02562 * 11 10 8 28 28 H 1.07993 * 122.53981 * 359.97438 * 17 16 2 29 29 H 1.08001 * 122.53676 * 180.02562 * 18 17 16 30 30 H 1.08002 * 125.21075 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.7066 -0.2209 -4.8811 9 1 1.0850 0.6567 -4.7821 10 6 2.0452 -0.6882 -6.1333 11 7 1.6108 -0.0655 -7.2072 12 14 3.1209 -2.2057 -6.3045 13 1 2.2634 -3.4169 -6.3568 14 1 3.9179 -2.1091 -7.5538 15 1 4.0367 -2.2974 -5.1390 16 6 2.0323 -0.7103 1.2306 17 6 2.8024 -0.1644 2.1730 18 6 3.1394 -1.0122 3.2141 19 6 2.6426 -2.2462 3.1174 20 16 1.6856 -2.3833 1.6481 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.1537 0.5418 -2.5435 25 1 3.2948 -0.9335 -3.6463 26 1 1.8419 -1.9618 -3.6548 27 1 1.8487 -0.3945 -8.0882 28 1 3.1375 0.8612 2.1273 29 1 3.7571 -0.6979 4.0424 30 1 2.8007 -3.0390 3.8336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331156240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:57 Heat of formation + Delta-G solvation = -12.811975 kcal Electronic energy + Delta-G solvation = -14425.908082 eV Core-core repulsion = 11926.643848 eV Total energy + Delta-G solvation = -2499.264234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.38636 -37.53138 -34.33392 -33.76683 -32.28126 -28.71799 -27.73621 -24.72809 -23.27746 -21.72180 -19.82601 -19.27128 -17.60775 -16.70268 -15.96646 -15.54295 -15.04700 -14.66953 -14.14609 -13.54591 -13.18364 -12.97996 -12.64399 -12.41371 -12.34452 -12.13617 -11.89187 -11.60646 -11.37019 -11.02025 -10.77342 -10.49826 -9.98228 -9.51224 -9.26062 -8.79220 -8.53514 -8.25123 -8.14517 -6.22825 -4.25196 1.11426 1.79840 2.19810 2.82029 3.18219 3.26351 3.32782 3.41432 3.98396 4.32464 4.61443 5.06085 5.11971 5.13136 5.14240 5.39803 5.58235 5.62190 5.71682 5.82410 6.09555 6.18677 6.37320 6.56141 6.79564 7.05677 7.19477 7.37271 8.10833 8.48690 8.73006 8.89345 9.37339 10.89082 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044535 B = 0.005557 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.572751 B = 5037.759114 C = 5344.063356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 H 0.111 0.889 4 C 0.501 3.499 5 O -0.545 6.545 6 N -0.702 5.702 7 C 0.221 3.779 8 C -0.544 4.544 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.136 4.136 19 C -0.232 4.232 20 S 0.140 5.860 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.396 0.604 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.268 0.732 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 -0.124 18.704 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 H 0.129 0.871 4 C 0.284 3.716 5 O -0.423 6.423 6 N -0.351 5.351 7 C 0.098 3.902 8 C -0.582 4.582 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.529 5.529 12 Si 0.702 3.298 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.263 4.263 17 C -0.178 4.178 18 C -0.167 4.167 19 C -0.368 4.368 20 S 0.405 5.595 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.230 0.770 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.463 -2.024 17.870 18.044 hybrid contribution 1.215 0.784 0.337 1.485 sum -0.248 -1.240 18.207 18.251 Atomic orbital electron populations 1.21838 0.91913 1.03138 1.03145 1.19894 0.97543 0.99901 0.89581 0.87140 1.20312 0.81321 0.85181 0.84752 1.90688 1.38333 1.26552 1.86714 1.46144 1.51856 1.31383 1.05689 1.19502 0.95123 0.93126 0.82406 1.21085 1.33789 1.14423 0.88858 0.90231 1.24784 0.95366 0.96937 0.95463 1.69878 1.44820 1.40184 0.98058 0.86829 0.81349 0.83341 0.78259 1.19826 1.20875 1.18515 1.23987 1.04994 0.97483 0.99837 1.20028 1.01223 1.01529 0.95022 1.20026 1.03083 0.93209 1.00348 1.25663 1.07101 1.01449 1.02618 1.84322 1.49166 1.10204 1.15773 0.91285 0.90893 0.91944 0.76967 0.95694 0.96135 0.92246 0.84613 0.84772 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.01 37.16 0.33 -1.33 16 2 C -0.05 -0.65 3.10 -92.92 -0.29 -0.93 16 3 H 0.11 1.31 8.09 -51.92 -0.42 0.89 16 4 C 0.50 9.53 7.12 -10.98 -0.08 9.45 16 5 O -0.54 -12.39 15.27 5.55 0.08 -12.30 16 6 N -0.70 -14.08 5.44 -61.47 -0.33 -14.41 16 7 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 8 C -0.54 -14.83 9.83 -34.44 -0.34 -15.17 16 9 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 10 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 12 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 16 C -0.14 -2.09 4.60 -36.00 -0.17 -2.25 16 17 C -0.15 -1.89 10.01 -41.21 -0.41 -2.31 16 18 C -0.14 -1.60 10.18 -41.21 -0.42 -2.02 16 19 C -0.23 -2.80 11.23 29.04 0.33 -2.47 16 20 S 0.14 2.00 22.19 -107.50 -2.39 -0.38 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.80 7.57 -51.93 -0.39 0.40 16 23 H 0.06 0.78 7.99 -51.93 -0.41 0.37 16 24 H 0.40 6.92 7.75 -40.82 -0.32 6.60 16 25 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 26 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -32.05 274.76 -7.13 -39.19 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.58 Total: 2.12 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.44 Total: -40.05 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.39 Total: -0.38 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.05 -7.13 -39.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331156240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.376 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds