Wall clock time and date at job start Sun Mar 29 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.50706 * 109.47174 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99324 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00250 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00091 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00065 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46927 * 89.99821 * 12 10 8 14 14 H 1.48498 * 109.47123 * 209.99895 * 12 10 8 15 15 H 1.48503 * 109.47167 * 329.99632 * 12 10 8 16 16 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 17 17 C 1.33386 * 125.20506 * 240.00294 * 16 2 1 18 18 C 1.38423 * 114.91934 * 179.97438 * 17 16 2 19 19 C 1.33382 * 114.92452 * 359.97438 * 18 17 16 20 20 S 1.75887 * 109.59293 * 359.75798 * 19 18 17 21 21 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 25 25 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 26 26 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 27 27 H 0.97004 * 120.00400 * 180.02562 * 11 10 8 28 28 H 1.07993 * 122.53981 * 359.97438 * 17 16 2 29 29 H 1.08001 * 122.53676 * 180.02562 * 18 17 16 30 30 H 1.08002 * 125.21075 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.7066 -0.2209 -4.8811 9 1 1.0850 0.6567 -4.7821 10 6 2.0452 -0.6882 -6.1333 11 7 1.6108 -0.0655 -7.2072 12 14 3.1209 -2.2057 -6.3045 13 1 2.2634 -3.4169 -6.3568 14 1 3.9179 -2.1091 -7.5538 15 1 4.0367 -2.2974 -5.1390 16 6 2.0323 -0.7103 1.2306 17 6 2.8024 -0.1644 2.1730 18 6 3.1394 -1.0122 3.2141 19 6 2.6426 -2.2462 3.1174 20 16 1.6856 -2.3833 1.6481 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.1537 0.5418 -2.5435 25 1 3.2948 -0.9335 -3.6463 26 1 1.8419 -1.9618 -3.6548 27 1 1.8487 -0.3945 -8.0882 28 1 3.1375 0.8612 2.1273 29 1 3.7571 -0.6979 4.0424 30 1 2.8007 -3.0390 3.8336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331156240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:57 Heat of formation + Delta-G solvation = -34.415771 kcal Electronic energy + Delta-G solvation = -14426.844893 eV Core-core repulsion = 11926.643848 eV Total energy + Delta-G solvation = -2500.201045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85727 -38.57820 -36.17592 -34.98676 -34.24285 -30.16959 -29.20330 -25.85505 -24.67672 -23.34613 -21.37551 -20.22674 -19.26786 -18.21731 -17.43152 -16.91636 -16.49566 -16.17501 -15.84844 -14.91841 -14.70806 -14.39309 -14.12794 -13.82407 -13.54692 -13.17457 -13.10384 -13.04611 -12.73718 -12.54412 -12.40174 -11.95164 -11.66142 -11.49883 -10.92880 -10.78279 -9.94485 -9.53907 -9.27367 -8.40906 -6.47597 0.13067 0.80705 1.22851 1.31020 1.33659 1.45852 1.69327 1.87259 2.26759 2.51164 2.94597 3.55586 3.88297 4.09454 4.26493 4.33185 4.66355 4.72908 4.77413 4.83315 4.88888 5.01594 5.18359 5.24685 5.25782 5.42179 5.50218 5.65545 6.07705 6.53260 6.81721 7.14732 7.38167 8.73760 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044535 B = 0.005557 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.572751 B = 5037.759114 C = 5344.063356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 H 0.139 0.861 4 C 0.499 3.501 5 O -0.583 6.583 6 N -0.702 5.702 7 C 0.233 3.767 8 C -0.545 4.545 9 H 0.062 0.938 10 C 0.029 3.971 11 N -0.930 5.930 12 Si 0.934 3.066 13 H -0.266 1.266 14 H -0.272 1.272 15 H -0.263 1.263 16 C -0.169 4.169 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.223 4.223 20 S 0.081 5.919 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.409 0.591 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.272 0.728 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 0.241 20.589 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 H 0.157 0.843 4 C 0.285 3.715 5 O -0.464 6.464 6 N -0.352 5.352 7 C 0.109 3.891 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.172 4.172 11 N -0.569 5.569 12 Si 0.758 3.242 13 H -0.191 1.191 14 H -0.197 1.197 15 H -0.187 1.187 16 C -0.287 4.287 17 C -0.172 4.172 18 C -0.171 4.171 19 C -0.358 4.358 20 S 0.345 5.655 21 H 0.114 0.886 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.245 0.755 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.177 0.823 29 H 0.183 0.817 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.905 -1.635 19.776 19.864 hybrid contribution 1.038 0.719 -0.158 1.272 sum 0.133 -0.916 19.618 19.640 Atomic orbital electron populations 1.21853 0.90192 1.02788 1.04805 1.19884 0.98851 1.00333 0.86640 0.84335 1.21218 0.80123 0.84644 0.85505 1.90664 1.39999 1.28382 1.87333 1.45984 1.52313 1.31769 1.05089 1.19083 0.94116 0.92630 0.83289 1.21283 1.33112 1.13887 0.90038 0.92025 1.25554 0.96644 0.99690 0.95293 1.69973 1.46317 1.41882 0.98701 0.85903 0.79799 0.80100 0.78360 1.19052 1.19732 1.18712 1.24079 1.06784 0.97177 1.00685 1.20431 0.99586 1.02717 0.94492 1.20413 1.03003 0.92806 1.00891 1.25980 1.05887 1.02455 1.01517 1.84513 1.50975 1.11767 1.18238 0.88619 0.90192 0.93342 0.75461 0.97115 0.97272 0.91833 0.82301 0.81717 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.01 71.98 0.65 -2.34 16 2 C -0.03 -0.90 3.10 -12.29 -0.04 -0.94 16 3 H 0.14 2.84 8.09 -2.38 -0.02 2.82 16 4 C 0.50 18.65 7.12 87.66 0.62 19.28 16 5 O -0.58 -26.59 15.27 -3.04 -0.05 -26.63 16 6 N -0.70 -27.87 5.44 -466.79 -2.54 -30.41 16 7 C 0.23 11.47 4.50 85.64 0.39 11.86 16 8 C -0.55 -30.02 9.83 25.60 0.25 -29.77 16 9 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 10 C 0.03 1.62 5.47 84.65 0.46 2.08 16 11 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 12 Si 0.93 44.36 27.47 68.60 1.88 46.25 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.26 -12.47 6.54 99.48 0.65 -11.81 16 16 C -0.17 -4.58 4.60 24.59 0.11 -4.47 16 17 C -0.14 -3.21 10.01 21.22 0.21 -2.99 16 18 C -0.14 -2.86 10.18 21.21 0.22 -2.65 16 19 C -0.22 -4.86 11.23 66.72 0.75 -4.11 16 20 S 0.08 2.25 22.19 -56.49 -1.25 1.00 16 21 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.08 1.59 7.57 -2.38 -0.02 1.57 16 23 H 0.05 1.18 7.99 -2.39 -0.02 1.16 16 24 H 0.41 13.99 7.75 -92.71 -0.72 13.27 16 25 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 26 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -69.09 274.76 2.34 -66.75 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.37 Total: 12.21 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.62 Total: -14.04 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.24 Total: -85.53 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.25 Total: 1.00 kcal Total: -69.09 2.34 -66.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331156240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.334 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds