Wall clock time and date at job start Sun Mar 29 2020 22:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00518 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46922 * 90.00621 * 12 10 8 14 14 H 1.48500 * 109.47411 * 210.00442 * 12 10 8 15 15 H 1.48494 * 109.47378 * 330.00637 * 12 10 8 16 16 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 17 17 C 1.38422 * 122.53824 * 240.00141 * 16 2 1 18 18 C 1.33394 * 114.92038 * 179.97438 * 17 16 2 19 19 S 1.75878 * 109.59305 * 359.97438 * 18 17 16 20 20 C 1.33380 * 122.54116 * 59.70678 * 16 2 1 21 21 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 22 22 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 24 24 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 25 25 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 26 26 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 27 27 H 0.96992 * 120.00316 * 179.97438 * 11 10 8 28 28 H 1.08005 * 122.54181 * 359.95124 * 17 16 2 29 29 H 1.08004 * 125.19957 * 179.97438 * 18 17 16 30 30 H 1.08006 * 125.20342 * 0.02619 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6918 -0.2306 -4.8812 9 1 1.0713 0.6479 -4.7820 10 6 2.0248 -0.7016 -6.1334 11 7 2.7808 -1.7710 -6.2543 12 14 1.4011 0.1783 -7.6586 13 1 2.3785 1.2204 -8.0634 14 1 1.2363 -0.8012 -8.7626 15 1 0.0927 0.8151 -7.3625 16 6 2.0323 -0.7104 1.2304 17 6 2.8306 -0.0890 2.1752 18 6 3.1876 -0.8595 3.2039 19 16 2.4971 -2.4649 3.0058 20 6 1.7368 -1.9840 1.4945 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.1487 0.5387 -2.5435 25 1 3.2846 -0.9412 -3.6510 26 1 1.8308 -1.9683 -3.6506 27 1 3.0147 -2.1025 -7.1352 28 1 3.1412 0.9416 2.0860 29 1 3.8060 -0.5455 4.0318 30 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331219426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:31 Heat of formation + Delta-G solvation = -16.811230 kcal Electronic energy + Delta-G solvation = -14419.151073 eV Core-core repulsion = 11919.713418 eV Total energy + Delta-G solvation = -2499.437655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56115 -37.39865 -34.15088 -33.04344 -32.07421 -28.71077 -27.14512 -25.16438 -23.35039 -21.91075 -19.63257 -18.51834 -17.61464 -17.02375 -15.67476 -15.34183 -14.77179 -14.55752 -14.07865 -13.42596 -13.13299 -12.89354 -12.56722 -12.26207 -12.14605 -11.92792 -11.73839 -11.47678 -11.16828 -10.97492 -10.86608 -10.57146 -10.30540 -9.39342 -8.96714 -8.73105 -8.60643 -8.22851 -7.85946 -6.16503 -4.23522 1.18811 1.80783 2.11911 2.83628 3.24072 3.30256 3.32594 3.40625 4.16704 4.39904 4.86183 5.08516 5.19581 5.25507 5.37003 5.43375 5.61274 5.78248 5.85124 5.89289 6.17301 6.20473 6.52959 6.66156 7.32009 7.45738 7.52596 7.67343 7.97555 8.64584 8.78985 9.12771 9.43407 10.93732 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.055581 B = 0.004747 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.645032 B = 5896.703050 C = 6126.417075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 H 0.099 0.901 4 C 0.501 3.499 5 O -0.547 6.547 6 N -0.712 5.712 7 C 0.250 3.750 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C -0.087 4.087 17 C -0.121 4.121 18 C -0.222 4.222 19 S 0.078 5.922 20 C -0.169 4.169 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.390 0.610 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.138 0.862 29 H 0.161 0.839 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 4.178 16.421 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 H 0.117 0.883 4 C 0.285 3.715 5 O -0.426 6.426 6 N -0.360 5.360 7 C 0.129 3.871 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.099 4.099 17 C -0.152 4.152 18 C -0.357 4.357 19 S 0.341 5.659 20 C -0.304 4.304 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.223 0.777 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.089 1.972 17.184 17.571 hybrid contribution -0.442 2.070 -1.836 2.802 sum -3.531 4.042 15.348 16.260 Atomic orbital electron populations 1.21766 0.92427 1.02855 1.02471 1.20045 0.97225 0.99836 0.90783 0.88290 1.20304 0.81294 0.85175 0.84713 1.90671 1.38462 1.26670 1.86760 1.46438 1.51832 1.31271 1.06446 1.19094 0.95267 0.92835 0.79878 1.21228 1.33173 1.13126 0.90593 0.91907 1.24952 0.94851 0.94963 0.99236 1.69973 1.35745 1.22431 1.24177 0.86420 0.79175 0.79265 0.82080 1.20464 1.21012 1.19734 1.18392 1.00613 0.94211 0.96706 1.20048 0.99852 1.01232 0.94098 1.25424 1.08904 0.96791 1.04580 1.84100 1.48191 1.13485 1.20143 1.25342 1.06368 0.99009 0.99687 0.91505 0.92078 0.91762 0.77743 0.95623 0.95609 0.92454 0.84449 0.82177 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.92 37.16 0.33 -1.32 16 2 C -0.05 -0.80 2.97 -92.93 -0.28 -1.07 16 3 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 4 C 0.50 10.01 7.06 -10.99 -0.08 9.93 16 5 O -0.55 -13.25 15.24 5.55 0.08 -13.17 16 6 N -0.71 -14.90 5.44 -61.47 -0.33 -15.24 16 7 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 8 C -0.54 -14.71 9.28 -34.44 -0.32 -15.02 16 9 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 12 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C -0.09 -1.29 4.28 -106.25 -0.45 -1.74 16 17 C -0.12 -1.56 9.92 -41.21 -0.41 -1.97 16 18 C -0.22 -2.63 11.23 29.04 0.33 -2.30 16 19 S 0.08 0.98 23.34 -107.50 -2.51 -1.53 16 20 C -0.17 -2.52 9.27 29.03 0.27 -2.25 16 21 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 22 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.39 6.96 7.74 -40.82 -0.32 6.64 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.16 2.45 7.93 -52.48 -0.42 2.03 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -32.05 277.42 -7.19 -39.24 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.59 Total: 3.64 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.74 Total: -7.46 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.40 Total: -40.69 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.05 -7.19 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.430 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds