Wall clock time and date at job start Sun Mar 29 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48505 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47051 * 299.99822 * 3 2 1 6 6 H 1.48493 * 109.47171 * 59.99936 * 3 2 1 7 7 C 1.38805 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00156 * 0.28256 * 7 2 1 10 10 C 1.47430 * 125.64433 * 344.71662 * 9 7 2 11 11 C 1.54912 * 104.83156 * 204.09617 * 10 9 7 12 12 C 1.55161 * 101.57978 * 322.98759 * 11 10 9 13 13 C 1.47021 * 125.65271 * 164.41092 * 9 7 2 14 14 H 1.08995 * 109.88031 * 59.55760 * 13 9 7 15 15 C 1.52998 * 109.88196 * 298.39136 * 13 9 7 16 16 H 1.09002 * 109.47174 * 295.79738 * 15 13 9 17 17 O 1.42902 * 109.46966 * 55.79989 * 15 13 9 18 18 C 1.53005 * 109.47114 * 175.79340 * 15 13 9 19 19 F 1.39904 * 109.46643 * 63.80203 * 18 15 13 20 20 F 1.39900 * 109.47019 * 183.80098 * 18 15 13 21 21 F 1.39897 * 109.47007 * 303.80143 * 18 15 13 22 22 H 0.97008 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.36868 * 322.93133 * 10 9 7 24 24 H 1.08997 * 110.36571 * 85.25728 * 10 9 7 25 25 H 1.08995 * 111.00654 * 81.06463 * 11 10 9 26 26 H 1.09001 * 111.00337 * 204.91966 * 11 10 9 27 27 H 1.09002 * 110.71810 * 153.86730 * 12 11 10 28 28 H 1.08997 * 110.72248 * 277.14175 * 12 11 10 29 29 H 0.96698 * 114.00151 * 59.99443 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 -0.0048 10 6 -0.1062 -2.5549 0.3046 11 6 -0.2432 -4.0274 0.7657 12 6 0.7633 -4.7429 -0.1737 13 6 1.8951 -3.7048 -0.3261 14 1 2.7045 -3.9374 0.3658 15 6 2.4183 -3.7087 -1.7638 16 1 1.5861 -3.5687 -2.4537 17 8 3.3595 -2.6465 -1.9310 18 6 3.1020 -5.0463 -2.0541 19 9 2.1604 -6.0781 -1.9751 20 9 3.6560 -5.0178 -3.3384 21 9 4.1147 -5.2661 -1.1142 22 1 -0.4850 0.8401 -0.0004 23 1 -0.4028 -1.8775 1.1054 24 1 -0.7097 -2.3785 -0.5857 25 1 0.0496 -4.1388 1.8097 26 1 -1.2568 -4.3945 0.6046 27 1 1.1358 -5.6584 0.2859 28 1 0.3057 -4.9539 -1.1402 29 1 4.1282 -2.7067 -1.3474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334474323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:06 Heat of formation + Delta-G solvation = -181.109739 kcal Electronic energy + Delta-G solvation = -18558.812327 eV Core-core repulsion = 15067.640543 eV Total energy + Delta-G solvation = -3491.171784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.81578 -47.33392 -47.29080 -38.27945 -35.75108 -32.65649 -29.97489 -29.36151 -26.43741 -24.55004 -22.49601 -20.34843 -19.97244 -18.33516 -18.18620 -17.79357 -16.77612 -15.83253 -14.90576 -14.41960 -14.15125 -14.05160 -13.99550 -13.73916 -13.58649 -13.46170 -13.38088 -12.65182 -12.21900 -12.04334 -11.78630 -11.20546 -11.02935 -10.80385 -10.66329 -10.23242 -10.06647 -9.88885 -9.80260 -9.39567 -8.61134 -6.89676 -5.78067 -3.14035 3.05694 3.39930 3.46155 3.47964 4.07415 4.22109 4.37352 4.49405 4.91558 5.22169 5.34330 5.41298 5.60801 5.70780 5.75618 5.97639 6.21617 6.33924 6.52294 6.59406 6.80479 7.44751 7.55735 7.77265 7.87767 8.20349 9.14243 9.73904 10.38856 11.34377 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.009791 C = 0.007933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.706696 B = 2859.019716 C = 3528.715665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.578 5.578 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.129 3.871 14 H 0.049 0.951 15 C 0.065 3.935 16 H 0.129 0.871 17 O -0.510 6.510 18 C 0.411 3.589 19 F -0.184 7.184 20 F -0.188 7.188 21 F -0.189 7.189 22 H 0.253 0.747 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -9.788 -1.485 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.300 5.300 10 C 0.045 3.955 11 C -0.186 4.186 12 C -0.166 4.166 13 C 0.019 3.981 14 H 0.066 0.934 15 C 0.000 4.000 16 H 0.147 0.853 17 O -0.314 6.314 18 C 0.355 3.645 19 F -0.166 7.166 20 F -0.170 7.170 21 F -0.171 7.171 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.826 -9.345 -1.910 9.948 hybrid contribution 0.965 0.369 0.093 1.037 sum 3.791 -8.976 -1.817 9.912 Atomic orbital electron populations 1.69944 1.05047 1.25190 1.56336 1.24925 0.95686 0.97921 1.01564 0.86030 0.78920 0.83612 0.77062 1.20369 1.21747 1.21938 1.18995 0.90420 0.81681 1.43385 0.90336 1.44576 1.06712 1.01020 1.77711 1.21516 0.84666 0.90219 0.99091 1.23028 0.97650 0.99384 0.98585 1.22657 0.96703 0.96920 1.00322 1.21689 0.96149 0.89613 0.90606 0.93364 1.24320 0.91795 0.80185 1.03742 0.85344 1.86782 1.35018 1.45530 1.64020 1.22501 0.77701 0.90407 0.73865 1.93140 1.64818 1.62638 1.95961 1.93159 1.86574 1.96886 1.40352 1.93126 1.62548 1.95797 1.65588 0.93710 0.90725 0.95387 0.92122 0.92012 0.91670 0.91338 0.77946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.60 55.49 0.59 -25.70 15 2 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 15 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 7 C -0.22 -5.70 8.75 -15.06 -0.13 -5.83 15 8 H 0.08 1.99 7.05 -52.49 -0.37 1.62 15 9 N -0.58 -13.82 3.13 -162.57 -0.51 -14.33 15 10 C 0.17 3.92 5.40 -2.52 -0.01 3.91 15 11 C -0.15 -2.65 7.09 -24.58 -0.17 -2.82 15 12 C -0.13 -2.15 4.89 -24.89 -0.12 -2.27 15 13 C 0.13 2.49 2.86 -66.95 -0.19 2.29 15 14 H 0.05 0.93 7.58 -51.93 -0.39 0.53 15 15 C 0.06 1.17 2.74 -26.73 -0.07 1.09 15 16 H 0.13 2.41 8.04 -51.93 -0.42 1.99 15 17 O -0.51 -9.82 11.16 -35.23 -0.39 -10.21 15 18 C 0.41 6.52 2.84 37.16 0.11 6.63 15 19 F -0.18 -2.81 14.84 2.25 0.03 -2.78 15 20 F -0.19 -3.08 17.20 2.25 0.04 -3.04 15 21 F -0.19 -2.94 16.31 2.25 0.04 -2.91 15 22 H 0.25 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.07 1.93 6.97 -51.93 -0.36 1.57 15 24 H 0.03 0.70 8.05 -51.93 -0.42 0.28 15 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.06 0.97 8.03 -51.93 -0.42 0.56 15 28 H 0.07 1.10 7.10 -51.93 -0.37 0.73 15 29 H 0.37 6.04 8.58 45.56 0.39 6.43 15 LS Contribution 250.15 15.07 3.77 3.77 Total: -1.00 -28.84 250.15 -4.49 -33.33 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.34 Total: 2.23 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.70 Total: 2.79 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.08 Total: -40.03 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.39 Total: -10.21 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.11 Total: -8.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.84 -4.49 -33.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334474323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.776 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds