Wall clock time and date at job start Sun Mar 29 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48505 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47051 * 299.99822 * 3 2 1 6 6 H 1.48493 * 109.47171 * 59.99936 * 3 2 1 7 7 C 1.38805 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00156 * 0.28256 * 7 2 1 10 10 C 1.47430 * 125.64433 * 344.71662 * 9 7 2 11 11 C 1.54912 * 104.83156 * 204.09617 * 10 9 7 12 12 C 1.55161 * 101.57978 * 322.98759 * 11 10 9 13 13 C 1.47021 * 125.65271 * 164.41092 * 9 7 2 14 14 H 1.08995 * 109.88031 * 59.55760 * 13 9 7 15 15 C 1.52998 * 109.88196 * 298.39136 * 13 9 7 16 16 H 1.09002 * 109.47174 * 295.79738 * 15 13 9 17 17 O 1.42902 * 109.46966 * 55.79989 * 15 13 9 18 18 C 1.53005 * 109.47114 * 175.79340 * 15 13 9 19 19 F 1.39904 * 109.46643 * 63.80203 * 18 15 13 20 20 F 1.39900 * 109.47019 * 183.80098 * 18 15 13 21 21 F 1.39897 * 109.47007 * 303.80143 * 18 15 13 22 22 H 0.97008 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.36868 * 322.93133 * 10 9 7 24 24 H 1.08997 * 110.36571 * 85.25728 * 10 9 7 25 25 H 1.08995 * 111.00654 * 81.06463 * 11 10 9 26 26 H 1.09001 * 111.00337 * 204.91966 * 11 10 9 27 27 H 1.09002 * 110.71810 * 153.86730 * 12 11 10 28 28 H 1.08997 * 110.72248 * 277.14175 * 12 11 10 29 29 H 0.96698 * 114.00151 * 59.99443 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 -0.0048 10 6 -0.1062 -2.5549 0.3046 11 6 -0.2432 -4.0274 0.7657 12 6 0.7633 -4.7429 -0.1737 13 6 1.8951 -3.7048 -0.3261 14 1 2.7045 -3.9374 0.3658 15 6 2.4183 -3.7087 -1.7638 16 1 1.5861 -3.5687 -2.4537 17 8 3.3595 -2.6465 -1.9310 18 6 3.1020 -5.0463 -2.0541 19 9 2.1604 -6.0781 -1.9751 20 9 3.6560 -5.0178 -3.3384 21 9 4.1147 -5.2661 -1.1142 22 1 -0.4850 0.8401 -0.0004 23 1 -0.4028 -1.8775 1.1054 24 1 -0.7097 -2.3785 -0.5857 25 1 0.0496 -4.1388 1.8097 26 1 -1.2568 -4.3945 0.6046 27 1 1.1358 -5.6584 0.2859 28 1 0.3057 -4.9539 -1.1402 29 1 4.1282 -2.7067 -1.3474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334474323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:06 Heat of formation + Delta-G solvation = -200.798856 kcal Electronic energy + Delta-G solvation = -18559.666111 eV Core-core repulsion = 15067.640543 eV Total energy + Delta-G solvation = -3492.025568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.10291 -48.59878 -48.58205 -39.87214 -37.31284 -34.55240 -31.50468 -31.19470 -27.93780 -26.43478 -23.95079 -21.96395 -21.57236 -19.77493 -19.52181 -19.13594 -18.55965 -17.34388 -16.76791 -15.93194 -15.72417 -15.46080 -15.41517 -15.08053 -15.01477 -14.74323 -14.72323 -14.11903 -13.96156 -13.66664 -13.49563 -12.89105 -12.82116 -12.61744 -12.21527 -11.92614 -11.81210 -11.49965 -11.49604 -10.98501 -10.62830 -8.83854 -7.82319 -5.18595 1.47989 1.50522 1.59200 1.71204 2.51021 2.74198 2.86399 3.03807 3.40471 3.54503 3.76265 3.87596 3.93138 4.22423 4.28934 4.46178 4.74021 4.91802 5.04838 5.17760 5.35951 5.55795 5.67196 5.80242 6.24917 6.54398 7.13324 7.78314 8.43105 9.29508 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.009791 C = 0.007933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.706696 B = 2859.019716 C = 3528.715665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.300 1.300 6 H -0.296 1.296 7 C -0.210 4.210 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.120 4.120 13 C 0.124 3.876 14 H 0.057 0.943 15 C 0.069 3.931 16 H 0.119 0.881 17 O -0.530 6.530 18 C 0.428 3.572 19 F -0.175 7.175 20 F -0.188 7.188 21 F -0.183 7.183 22 H 0.244 0.756 23 H 0.037 0.963 24 H -0.002 1.002 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -11.536 -1.468 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.228 1.228 6 H -0.224 1.224 7 C -0.339 4.339 8 H 0.104 0.896 9 N -0.322 5.322 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.158 4.158 13 C 0.016 3.984 14 H 0.075 0.925 15 C 0.005 3.995 16 H 0.137 0.863 17 O -0.335 6.335 18 C 0.373 3.627 19 F -0.157 7.157 20 F -0.169 7.169 21 F -0.165 7.165 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.016 0.984 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.941 -11.137 -1.892 11.965 hybrid contribution 0.674 0.835 0.093 1.077 sum 4.615 -10.303 -1.800 11.432 Atomic orbital electron populations 1.70138 1.06279 1.24991 1.58685 1.25646 0.96446 1.00897 1.02971 0.85118 0.78597 0.80148 0.76134 1.18763 1.22790 1.22378 1.19336 0.90959 0.82716 1.40886 0.89560 1.44760 1.06990 1.02043 1.78385 1.21315 0.84233 0.93100 0.96680 1.22894 0.99656 0.95425 0.99155 1.22695 0.95303 0.96991 1.00786 1.21852 0.97233 0.88051 0.91282 0.92545 1.23989 0.91785 0.81217 1.02538 0.86299 1.86747 1.35751 1.46392 1.64641 1.21817 0.77663 0.89358 0.73900 1.93163 1.64554 1.62049 1.95919 1.93166 1.86532 1.96855 1.40385 1.93147 1.62268 1.95691 1.65359 0.94667 0.94441 0.98371 0.91310 0.89537 0.88686 0.90424 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.30 10.60 21.65 0.23 -56.07 15 2 C -0.07 -3.72 5.47 84.86 0.46 -3.26 15 3 Si 0.97 45.54 29.55 68.60 2.03 47.56 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 15 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 15 7 C -0.21 -11.01 8.75 84.03 0.74 -10.27 15 8 H 0.09 4.28 7.05 -2.91 -0.02 4.26 15 9 N -0.60 -28.40 3.13 -668.24 -2.09 -30.49 15 10 C 0.17 8.01 5.40 86.85 0.47 8.48 15 11 C -0.13 -4.47 7.09 31.99 0.23 -4.25 15 12 C -0.12 -3.63 4.89 31.79 0.16 -3.48 15 13 C 0.12 4.51 2.86 45.35 0.13 4.64 15 14 H 0.06 2.00 7.58 -2.39 -0.02 1.98 15 15 C 0.07 2.36 2.74 30.60 0.08 2.44 15 16 H 0.12 4.30 8.04 -2.39 -0.02 4.28 15 17 O -0.53 -19.58 11.16 -148.98 -1.66 -21.24 15 18 C 0.43 12.32 2.84 71.98 0.20 12.53 15 19 F -0.18 -4.72 14.84 44.97 0.67 -4.05 15 20 F -0.19 -5.64 17.20 44.97 0.77 -4.87 15 21 F -0.18 -5.09 16.31 44.97 0.73 -4.36 15 22 H 0.24 14.19 8.31 -92.70 -0.77 13.42 15 23 H 0.04 2.00 6.97 -2.39 -0.02 1.98 15 24 H 0.00 -0.09 8.05 -2.39 -0.02 -0.11 15 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 27 H 0.09 2.38 8.03 -2.39 -0.02 2.36 15 28 H 0.08 2.23 7.10 -2.39 -0.02 2.22 15 29 H 0.39 11.75 8.58 -74.06 -0.64 11.12 15 Total: -1.00 -61.98 250.15 3.70 -58.29 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.55 Total: 8.39 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 2.47 Total: 6.84 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.86 Total: -86.56 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.66 Total: -21.24 kcal Atomic # 9 Polarization: -15.45 SS G_CDS: 2.17 Total: -13.28 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.98 3.70 -58.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334474323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.510 kcal (2) G-P(sol) polarization free energy of solvation -61.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds