Wall clock time and date at job start Sun Mar 29 2020 22:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47300 * 240.00736 * 3 2 1 5 5 H 1.48506 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47122 * 120.00245 * 3 2 1 7 7 C 1.38812 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99562 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64776 * 15.77714 * 9 7 2 11 11 C 1.54907 * 104.83467 * 155.60790 * 10 9 7 12 12 C 1.55159 * 101.58095 * 37.00378 * 11 10 9 13 13 C 1.47024 * 125.64874 * 195.46677 * 9 7 2 14 14 H 1.08997 * 109.87982 * 300.74013 * 13 9 7 15 15 C 1.52994 * 109.88303 * 61.90465 * 13 9 7 16 16 H 1.09004 * 109.47492 * 303.08571 * 15 13 9 17 17 O 1.42905 * 109.46803 * 63.08060 * 15 13 9 18 18 C 1.53002 * 109.47284 * 183.08248 * 15 13 9 19 19 F 1.39890 * 109.47030 * 55.65981 * 18 15 13 20 20 F 1.39897 * 109.46823 * 175.66049 * 18 15 13 21 21 F 1.39896 * 109.46768 * 295.65940 * 18 15 13 22 22 H 0.97001 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.09006 * 110.36709 * 274.44092 * 10 9 7 24 24 H 1.09002 * 110.36755 * 36.76855 * 10 9 7 25 25 H 1.08992 * 111.00804 * 155.08166 * 11 10 9 26 26 H 1.09004 * 111.00145 * 278.90078 * 11 10 9 27 27 H 1.09001 * 110.71773 * 82.86652 * 12 11 10 28 28 H 1.09001 * 110.72190 * 205.95471 * 12 11 10 29 29 H 0.96695 * 113.99932 * 66.38539 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1025 -2.5556 -0.3258 11 6 -0.2329 -4.0269 -0.7927 12 6 0.7644 -4.7441 0.1552 13 6 1.8946 -3.7059 0.3176 14 1 2.7089 -3.9338 -0.3702 15 6 2.4082 -3.7168 1.7587 16 1 3.1391 -2.9189 1.8900 17 8 1.3145 -3.5132 2.6556 18 6 3.0668 -5.0656 2.0552 19 9 4.0734 -5.3098 1.1149 20 9 3.6234 -5.0406 3.3384 21 9 2.1056 -6.0796 1.9834 22 1 -0.4850 0.8400 0.0004 23 1 -0.7158 -2.3826 0.5586 24 1 -0.3912 -1.8762 -1.1277 25 1 -1.2476 -4.3957 -0.6436 26 1 0.0708 -4.1347 -1.8340 27 1 0.2968 -4.9585 1.1162 28 1 1.1406 -5.6594 -0.3017 29 1 0.6727 -4.2364 2.6639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334474326.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:08 Heat of formation + Delta-G solvation = -179.959363 kcal Electronic energy + Delta-G solvation = -18578.706759 eV Core-core repulsion = 15087.584859 eV Total energy + Delta-G solvation = -3491.121900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.85204 -47.37849 -47.30871 -38.45931 -35.61288 -32.57642 -30.26313 -29.26107 -26.49568 -24.57929 -22.67446 -20.42857 -19.71945 -18.32223 -18.25628 -17.84062 -16.75296 -15.92434 -14.94997 -14.55841 -14.16747 -14.10805 -13.89768 -13.77992 -13.67131 -13.49065 -13.41868 -12.77795 -12.27057 -11.99854 -11.70344 -11.20703 -11.06865 -10.83327 -10.56421 -10.19551 -10.14139 -9.88559 -9.81266 -9.64364 -8.62683 -6.87011 -5.82238 -3.18868 3.02971 3.37583 3.42346 3.42813 4.04595 4.18690 4.36573 4.45403 4.88094 5.22940 5.25718 5.38066 5.58156 5.66933 5.79010 6.05918 6.14672 6.32836 6.54280 6.57961 6.77753 7.44363 7.57454 7.73642 7.80707 8.18806 9.10633 9.71094 10.38553 11.29733 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.009411 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.883189 B = 2974.500561 C = 3474.388644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.005 3.995 3 Si 0.912 3.088 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.173 3.827 11 C -0.147 4.147 12 C -0.131 4.131 13 C 0.131 3.869 14 H 0.054 0.946 15 C 0.062 3.938 16 H 0.136 0.864 17 O -0.516 6.516 18 C 0.412 3.588 19 F -0.183 7.183 20 F -0.188 7.188 21 F -0.188 7.188 22 H 0.255 0.745 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -10.063 1.823 10.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.194 4.194 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.297 5.297 10 C 0.049 3.951 11 C -0.186 4.186 12 C -0.169 4.169 13 C 0.022 3.978 14 H 0.072 0.928 15 C -0.003 4.003 16 H 0.153 0.847 17 O -0.321 6.321 18 C 0.357 3.643 19 F -0.165 7.165 20 F -0.170 7.170 21 F -0.169 7.169 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.589 -9.256 1.923 9.801 hybrid contribution 0.401 0.059 0.138 0.428 sum 2.990 -9.196 2.060 9.887 Atomic orbital electron populations 1.69925 1.05082 1.25574 1.54899 1.24940 0.95670 0.97914 1.00836 0.86221 0.78631 0.82970 0.78038 1.20982 1.21496 1.20917 1.18902 0.90338 0.82120 1.45634 0.90721 1.44392 1.07026 1.00716 1.77576 1.21469 0.84803 0.89977 0.98874 1.23024 0.97582 0.99519 0.98484 1.22668 0.97099 0.97153 0.99964 1.21652 0.96044 0.89464 0.90660 0.92814 1.24233 0.90605 0.90019 0.95428 0.84662 1.86786 1.35194 1.47300 1.62781 1.22389 0.77444 0.90480 0.73979 1.93144 1.62556 1.95405 1.65389 1.93163 1.86300 1.96938 1.40586 1.93119 1.63610 1.64185 1.96010 0.93449 0.95094 0.91079 0.92060 0.92129 0.91797 0.91649 0.78271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.05 10.62 55.49 0.59 -25.46 15 2 C 0.00 0.12 5.47 -17.43 -0.10 0.03 15 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.24 -6.48 9.75 -15.06 -0.15 -6.62 15 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 15 9 N -0.57 -13.95 3.05 -162.58 -0.50 -14.44 15 10 C 0.17 4.04 5.40 -2.53 -0.01 4.02 15 11 C -0.15 -2.65 7.09 -24.58 -0.17 -2.82 15 12 C -0.13 -2.18 4.77 -24.90 -0.12 -2.30 15 13 C 0.13 2.58 2.87 -66.96 -0.19 2.38 15 14 H 0.05 1.06 7.60 -51.93 -0.39 0.66 15 15 C 0.06 1.14 2.90 -26.73 -0.08 1.06 15 16 H 0.14 2.65 7.91 -51.93 -0.41 2.24 15 17 O -0.52 -9.85 13.15 -35.23 -0.46 -10.32 15 18 C 0.41 6.59 2.84 37.16 0.11 6.70 15 19 F -0.18 -2.93 16.57 2.25 0.04 -2.90 15 20 F -0.19 -3.07 17.31 2.25 0.04 -3.03 15 21 F -0.19 -2.79 14.21 2.25 0.03 -2.76 15 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 23 H 0.03 0.79 8.04 -51.93 -0.42 0.37 15 24 H 0.07 1.85 7.00 -51.93 -0.36 1.48 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.06 0.98 5.19 -51.93 -0.27 0.71 15 28 H 0.06 0.97 8.03 -51.93 -0.42 0.55 15 29 H 0.37 5.76 6.44 45.56 0.29 6.05 15 LS Contribution 249.49 15.07 3.76 3.76 Total: -1.00 -28.92 249.49 -4.61 -33.53 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.37 Total: 2.55 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.71 Total: 2.45 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.09 Total: -39.91 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.46 Total: -10.32 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.11 Total: -8.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.92 -4.61 -33.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334474326.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.425 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds