Wall clock time and date at job start Sun Mar 29 2020 22:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47300 * 240.00736 * 3 2 1 5 5 H 1.48506 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47122 * 120.00245 * 3 2 1 7 7 C 1.38812 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99562 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64776 * 15.77714 * 9 7 2 11 11 C 1.54907 * 104.83467 * 155.60790 * 10 9 7 12 12 C 1.55159 * 101.58095 * 37.00378 * 11 10 9 13 13 C 1.47024 * 125.64874 * 195.46677 * 9 7 2 14 14 H 1.08997 * 109.87982 * 300.74013 * 13 9 7 15 15 C 1.52994 * 109.88303 * 61.90465 * 13 9 7 16 16 H 1.09004 * 109.47492 * 303.08571 * 15 13 9 17 17 O 1.42905 * 109.46803 * 63.08060 * 15 13 9 18 18 C 1.53002 * 109.47284 * 183.08248 * 15 13 9 19 19 F 1.39890 * 109.47030 * 55.65981 * 18 15 13 20 20 F 1.39897 * 109.46823 * 175.66049 * 18 15 13 21 21 F 1.39896 * 109.46768 * 295.65940 * 18 15 13 22 22 H 0.97001 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.09006 * 110.36709 * 274.44092 * 10 9 7 24 24 H 1.09002 * 110.36755 * 36.76855 * 10 9 7 25 25 H 1.08992 * 111.00804 * 155.08166 * 11 10 9 26 26 H 1.09004 * 111.00145 * 278.90078 * 11 10 9 27 27 H 1.09001 * 110.71773 * 82.86652 * 12 11 10 28 28 H 1.09001 * 110.72190 * 205.95471 * 12 11 10 29 29 H 0.96695 * 113.99932 * 66.38539 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1025 -2.5556 -0.3258 11 6 -0.2329 -4.0269 -0.7927 12 6 0.7644 -4.7441 0.1552 13 6 1.8946 -3.7059 0.3176 14 1 2.7089 -3.9338 -0.3702 15 6 2.4082 -3.7168 1.7587 16 1 3.1391 -2.9189 1.8900 17 8 1.3145 -3.5132 2.6556 18 6 3.0668 -5.0656 2.0552 19 9 4.0734 -5.3098 1.1149 20 9 3.6234 -5.0406 3.3384 21 9 2.1056 -6.0796 1.9834 22 1 -0.4850 0.8400 0.0004 23 1 -0.7158 -2.3826 0.5586 24 1 -0.3912 -1.8762 -1.1277 25 1 -1.2476 -4.3957 -0.6436 26 1 0.0708 -4.1347 -1.8340 27 1 0.2968 -4.9585 1.1162 28 1 1.1406 -5.6594 -0.3017 29 1 0.6727 -4.2364 2.6639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334474326.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:07 Heat of formation + Delta-G solvation = -199.725917 kcal Electronic energy + Delta-G solvation = -18579.563901 eV Core-core repulsion = 15087.584859 eV Total energy + Delta-G solvation = -3491.979042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.14668 -48.64223 -48.61567 -40.04256 -37.21978 -34.48063 -31.83059 -31.05861 -28.00835 -26.48209 -24.12608 -22.11000 -21.28531 -19.78015 -19.56768 -19.19927 -18.56559 -17.42252 -16.84895 -16.04942 -15.76078 -15.45964 -15.37746 -15.19747 -15.04765 -14.78694 -14.74717 -14.31394 -13.97753 -13.65790 -13.39042 -12.93236 -12.77960 -12.60022 -12.18960 -12.01874 -11.78560 -11.53713 -11.49848 -11.20945 -10.64028 -8.82146 -7.87870 -5.25136 1.46725 1.49280 1.55072 1.66935 2.47125 2.69691 2.82338 3.01948 3.35330 3.49965 3.72003 3.81506 3.94316 4.20113 4.27933 4.52758 4.65386 4.92370 5.04457 5.16044 5.32927 5.47304 5.66577 5.79975 6.21810 6.49863 7.08581 7.74673 8.41513 9.23081 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.009411 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.883189 B = 2974.500561 C = 3474.388644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.054 4.054 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.122 4.122 13 C 0.124 3.876 14 H 0.058 0.942 15 C 0.067 3.933 16 H 0.118 0.882 17 O -0.534 6.534 18 C 0.430 3.570 19 F -0.180 7.180 20 F -0.187 7.187 21 F -0.175 7.175 22 H 0.248 0.752 23 H 0.001 0.999 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -11.763 1.915 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.171 4.171 12 C -0.159 4.159 13 C 0.016 3.984 14 H 0.075 0.925 15 C 0.003 3.997 16 H 0.136 0.864 17 O -0.341 6.341 18 C 0.375 3.625 19 F -0.162 7.162 20 F -0.169 7.169 21 F -0.157 7.157 22 H 0.057 0.943 23 H 0.019 0.981 24 H 0.051 0.949 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.325 -11.004 2.018 11.671 hybrid contribution 0.205 0.519 0.110 0.569 sum 3.529 -10.485 2.128 11.266 Atomic orbital electron populations 1.70126 1.06336 1.25511 1.56822 1.25694 0.96473 1.00992 1.01714 0.85263 0.77335 0.79155 0.78227 1.20090 1.22122 1.20508 1.19259 0.90829 0.83451 1.44023 0.90323 1.44571 1.07355 1.01658 1.78319 1.21250 0.84203 0.92916 0.96425 1.22890 0.99713 0.95512 0.99007 1.22705 0.95511 0.97026 1.00695 1.21823 0.97229 0.88113 0.91254 0.92452 1.23867 0.90364 0.91070 0.94441 0.86401 1.86762 1.35885 1.48641 1.62850 1.21688 0.77421 0.89425 0.73991 1.93161 1.62417 1.95294 1.65287 1.93171 1.86265 1.96905 1.40529 1.93147 1.63139 1.63423 1.95952 0.94303 0.98111 0.94878 0.89379 0.91457 0.90262 0.88663 0.76569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 10.62 21.65 0.23 -55.41 15 2 C -0.05 -3.03 5.47 84.86 0.46 -2.57 15 3 Si 0.97 45.16 29.55 68.60 2.03 47.19 15 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.30 -13.85 7.11 99.48 0.71 -13.15 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 7 C -0.25 -13.33 9.75 84.03 0.82 -12.51 15 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 15 9 N -0.60 -28.92 3.05 -668.28 -2.04 -30.96 15 10 C 0.18 8.32 5.40 86.85 0.47 8.79 15 11 C -0.13 -4.47 7.09 31.99 0.23 -4.24 15 12 C -0.12 -3.65 4.77 31.78 0.15 -3.50 15 13 C 0.12 4.64 2.87 45.34 0.13 4.77 15 14 H 0.06 2.13 7.60 -2.39 -0.02 2.11 15 15 C 0.07 2.35 2.90 30.59 0.09 2.44 15 16 H 0.12 4.56 7.91 -2.38 -0.02 4.54 15 17 O -0.53 -19.69 13.15 -148.98 -1.96 -21.65 15 18 C 0.43 12.56 2.84 71.98 0.20 12.76 15 19 F -0.18 -5.24 16.57 44.97 0.75 -4.50 15 20 F -0.19 -5.65 17.31 44.97 0.78 -4.87 15 21 F -0.18 -4.54 14.21 44.97 0.64 -3.90 15 22 H 0.25 14.35 8.31 -92.71 -0.77 13.58 15 23 H 0.00 0.04 8.04 -2.38 -0.02 0.02 15 24 H 0.03 1.77 7.00 -2.39 -0.02 1.76 15 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.08 2.14 5.19 -2.39 -0.01 2.12 15 28 H 0.09 2.36 8.03 -2.39 -0.02 2.34 15 29 H 0.38 11.13 6.44 -74.06 -0.48 10.65 15 Total: -1.00 -62.63 249.49 3.68 -58.95 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.71 Total: 9.19 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 2.55 Total: 5.95 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.81 Total: -86.37 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.96 Total: -21.65 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 2.16 Total: -13.27 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.63 3.68 -58.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334474326.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.773 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds