Wall clock time and date at job start Sun Mar 29 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99656 * 2 1 4 4 H 1.48494 * 109.47473 * 270.00336 * 3 2 1 5 5 H 1.48503 * 109.47409 * 30.00760 * 3 2 1 6 6 H 1.48506 * 109.46960 * 150.00340 * 3 2 1 7 7 C 1.37871 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99982 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99913 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.39494 * 120.00310 * 185.09313 * 13 11 10 15 15 C 1.39025 * 119.67132 * 174.91460 * 14 13 11 16 16 C 1.38354 * 119.13062 * 179.97438 * 15 14 13 17 17 C 1.39016 * 118.47081 * 359.97438 * 16 15 14 18 18 F 1.35101 * 120.36569 * 179.97438 * 17 16 15 19 19 C 1.38257 * 119.26677 * 359.97438 * 17 16 15 20 20 N 1.31963 * 120.81462 * 0.02562 * 19 17 16 21 21 H 0.96997 * 120.00499 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46657 * 60.00365 * 9 7 2 23 23 H 1.08996 * 109.47218 * 300.00300 * 9 7 2 24 24 H 0.96998 * 120.00057 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99741 * 5.09559 * 13 11 10 26 26 H 1.07997 * 120.43628 * 0.24938 * 15 14 13 27 27 H 1.07997 * 120.76017 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.59428 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0005 13 7 5.7744 -4.0920 -0.0013 14 6 7.1413 -4.3485 0.1060 15 6 7.5892 -5.6604 0.2117 16 6 8.9474 -5.9020 0.3170 17 6 9.8159 -4.8166 0.3124 18 9 11.1494 -5.0084 0.4136 19 6 9.2999 -3.5385 0.2029 20 7 7.9989 -3.3409 0.1040 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8746 -0.6799 -0.8911 24 1 3.3697 -3.3124 -0.0010 25 1 5.1472 -4.8282 -0.0763 26 1 6.8864 -6.4804 0.2072 27 1 9.3242 -6.9107 0.4001 28 1 9.9698 -2.6914 0.1992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334568952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:22 Heat of formation + Delta-G solvation = -21.902518 kcal Electronic energy + Delta-G solvation = -15924.106623 eV Core-core repulsion = 12890.527769 eV Total energy + Delta-G solvation = -3033.578855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.97156 -40.70402 -38.91788 -34.86267 -34.20216 -32.59961 -32.35805 -29.78566 -27.67341 -24.39854 -23.44188 -21.98071 -20.50035 -18.70258 -18.04696 -17.61947 -16.83398 -16.19414 -15.90437 -15.19062 -15.04237 -14.45204 -14.16435 -13.85699 -13.65183 -13.60435 -13.14777 -12.63015 -12.39507 -12.29962 -11.01692 -10.83093 -10.50292 -10.10280 -10.08633 -9.94325 -9.51519 -9.07863 -8.79932 -8.36578 -8.01414 -6.23269 -4.25894 0.84652 1.01915 2.72434 3.27176 3.34317 3.38492 3.43189 3.90920 3.98194 4.24827 4.32716 4.53097 4.64971 4.77951 5.07699 5.12356 5.36512 5.57490 5.71654 6.21870 6.53889 6.71650 7.04480 7.07594 7.20924 7.37336 7.87309 8.24007 8.55825 8.75331 9.06253 9.36793 10.88475 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.061292 B = 0.004558 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.722719 B = 6141.010976 C = 6578.083429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.238 3.762 10 N -0.716 5.716 11 C 0.681 3.319 12 O -0.539 6.539 13 N -0.672 5.672 14 C 0.383 3.617 15 C -0.190 4.190 16 C -0.077 4.077 17 C -0.003 4.003 18 F -0.137 7.137 19 C 0.115 3.885 20 N -0.447 5.447 21 H 0.268 0.732 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.393 0.607 25 H 0.413 0.587 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.225 -13.078 0.442 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.116 3.884 10 N -0.370 5.370 11 C 0.380 3.620 12 O -0.411 6.411 13 N -0.320 5.320 14 C 0.150 3.850 15 C -0.214 4.214 16 C -0.104 4.104 17 C -0.027 4.027 18 F -0.116 7.116 19 C -0.045 4.045 20 N -0.160 5.160 21 H 0.078 0.922 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.226 0.774 25 H 0.249 0.751 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.322 -11.120 0.380 18.936 hybrid contribution 0.174 -0.798 0.029 0.817 sum 15.496 -11.918 0.409 19.553 Atomic orbital electron populations 1.69874 1.06212 1.27491 1.49338 1.24775 0.94800 0.99194 0.93819 0.86812 0.80622 0.83138 0.79114 1.19811 1.20903 1.18367 1.21062 0.88416 0.95246 1.53492 0.90238 1.19424 0.94942 0.77121 0.96914 1.45473 1.03225 1.11439 1.76835 1.16233 0.84045 0.82248 0.79462 1.91006 1.54416 1.41592 1.54109 1.42958 1.04500 1.09183 1.75350 1.18323 0.84885 0.88999 0.92822 1.21334 0.96031 0.95931 1.08098 1.21325 0.92411 0.99174 0.97505 1.18697 0.78338 0.95609 1.10051 1.91487 1.30035 1.95959 1.94139 1.22885 0.91563 0.95014 0.95051 1.67872 1.01507 1.32743 1.13928 0.92218 0.95647 0.96093 0.77354 0.75069 0.83718 0.83472 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.96 55.43 0.77 -25.46 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 15 7 C -0.54 -14.71 9.83 -34.44 -0.34 -15.04 15 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 15 9 C 0.24 5.81 4.50 -5.19 -0.02 5.78 15 10 N -0.72 -14.21 5.55 -66.41 -0.37 -14.57 15 11 C 0.68 13.23 8.52 -86.92 -0.74 12.49 15 12 O -0.54 -12.76 14.61 5.29 0.08 -12.68 15 13 N -0.67 -9.48 5.40 -15.80 -0.09 -9.56 15 14 C 0.38 5.37 7.42 -154.65 -1.15 4.23 15 15 C -0.19 -1.85 9.94 -39.25 -0.39 -2.24 15 16 C -0.08 -0.72 10.16 -39.25 -0.40 -1.12 15 17 C 0.00 -0.04 7.34 -39.29 -0.29 -0.33 15 18 F -0.14 -1.53 17.28 2.25 0.04 -1.49 15 19 C 0.12 1.51 11.16 -17.49 -0.20 1.31 15 20 N -0.45 -7.38 7.88 -12.30 -0.10 -7.47 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.03 0.66 7.20 -51.93 -0.37 0.28 15 23 H 0.02 0.54 7.57 -51.93 -0.39 0.14 15 24 H 0.39 6.61 8.34 -40.82 -0.34 6.27 15 25 H 0.41 3.99 8.72 -40.82 -0.36 3.63 15 26 H 0.15 0.90 8.06 -52.49 -0.42 0.48 15 27 H 0.15 0.91 8.06 -52.49 -0.42 0.49 15 28 H 0.17 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -34.00 259.39 -6.35 -40.36 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.31 Total: 3.11 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -3.62 Total: 7.18 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.22 Total: -57.07 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.00 -6.35 -40.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334568952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.453 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds