Wall clock time and date at job start Sun Mar 29 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99656 * 2 1 4 4 H 1.48494 * 109.47473 * 270.00336 * 3 2 1 5 5 H 1.48503 * 109.47409 * 30.00760 * 3 2 1 6 6 H 1.48506 * 109.46960 * 150.00340 * 3 2 1 7 7 C 1.37871 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99982 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99913 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.39494 * 120.00310 * 185.09313 * 13 11 10 15 15 C 1.39025 * 119.67132 * 174.91460 * 14 13 11 16 16 C 1.38354 * 119.13062 * 179.97438 * 15 14 13 17 17 C 1.39016 * 118.47081 * 359.97438 * 16 15 14 18 18 F 1.35101 * 120.36569 * 179.97438 * 17 16 15 19 19 C 1.38257 * 119.26677 * 359.97438 * 17 16 15 20 20 N 1.31963 * 120.81462 * 0.02562 * 19 17 16 21 21 H 0.96997 * 120.00499 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46657 * 60.00365 * 9 7 2 23 23 H 1.08996 * 109.47218 * 300.00300 * 9 7 2 24 24 H 0.96998 * 120.00057 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99741 * 5.09559 * 13 11 10 26 26 H 1.07997 * 120.43628 * 0.24938 * 15 14 13 27 27 H 1.07997 * 120.76017 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.59428 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0005 13 7 5.7744 -4.0920 -0.0013 14 6 7.1413 -4.3485 0.1060 15 6 7.5892 -5.6604 0.2117 16 6 8.9474 -5.9020 0.3170 17 6 9.8159 -4.8166 0.3124 18 9 11.1494 -5.0084 0.4136 19 6 9.2999 -3.5385 0.2029 20 7 7.9989 -3.3409 0.1040 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8746 -0.6799 -0.8911 24 1 3.3697 -3.3124 -0.0010 25 1 5.1472 -4.8282 -0.0763 26 1 6.8864 -6.4804 0.2072 27 1 9.3242 -6.9107 0.4001 28 1 9.9698 -2.6914 0.1992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334568952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:22 Heat of formation + Delta-G solvation = -47.196381 kcal Electronic energy + Delta-G solvation = -15925.203448 eV Core-core repulsion = 12890.527769 eV Total energy + Delta-G solvation = -3034.675679 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.86121 -41.83874 -40.23279 -36.35618 -35.78099 -34.39446 -33.47048 -31.01849 -29.41900 -25.45668 -24.66069 -23.57820 -21.97981 -20.17364 -19.20491 -18.53454 -18.43306 -17.54065 -16.92497 -16.71497 -16.49502 -15.99511 -15.35720 -15.02020 -14.92745 -14.76290 -14.48313 -14.24157 -14.04005 -13.51962 -13.03138 -12.71636 -11.93127 -11.72399 -11.65490 -11.47054 -10.95102 -10.90766 -10.23615 -9.99548 -9.15409 -8.39211 -6.45830 -0.08210 0.18374 1.34017 1.36015 1.49328 1.51618 2.08365 2.29328 2.77653 2.96746 3.03498 3.18502 3.59026 3.81020 3.90168 4.11552 4.58352 4.73112 4.83198 4.90988 5.04807 5.23867 5.26431 5.48248 5.71088 5.81371 6.16163 6.55323 6.80061 7.14858 7.26911 7.61165 8.75189 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.061292 B = 0.004558 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.722719 B = 6141.010976 C = 6578.083429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.714 5.714 11 C 0.684 3.316 12 O -0.586 6.586 13 N -0.654 5.654 14 C 0.349 3.651 15 C -0.161 4.161 16 C -0.067 4.067 17 C 0.004 3.996 18 F -0.136 7.136 19 C 0.093 3.907 20 N -0.501 5.501 21 H 0.272 0.728 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.408 0.592 25 H 0.435 0.565 26 H 0.190 0.810 27 H 0.189 0.811 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.427 -15.092 0.515 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.369 5.369 11 C 0.383 3.617 12 O -0.462 6.462 13 N -0.305 5.305 14 C 0.117 3.883 15 C -0.184 4.184 16 C -0.094 4.094 17 C -0.020 4.020 18 F -0.115 7.115 19 C -0.066 4.066 20 N -0.215 5.215 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.244 0.756 25 H 0.275 0.725 26 H 0.207 0.793 27 H 0.206 0.794 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 16.548 -13.219 0.453 21.184 hybrid contribution -0.108 -0.324 0.014 0.342 sum 16.440 -13.543 0.467 21.305 Atomic orbital electron populations 1.69969 1.07582 1.28592 1.50706 1.25543 0.95521 1.02532 0.93666 0.85889 0.79253 0.79517 0.79417 1.19069 1.19853 1.18587 1.21255 0.89720 0.94691 1.52543 0.91878 1.18976 0.93130 0.79476 0.95645 1.45125 1.04118 1.10256 1.77359 1.16315 0.83145 0.83521 0.78696 1.90975 1.55393 1.43769 1.56045 1.42529 1.05430 1.07707 1.74840 1.18710 0.84195 0.90438 0.94991 1.21712 0.96994 0.94939 1.04783 1.21794 0.91735 1.00313 0.95516 1.18779 0.78611 0.95629 1.08933 1.91496 1.30078 1.95891 1.94020 1.22944 0.90837 0.96431 0.96413 1.67666 1.03083 1.35185 1.15539 0.91842 0.97118 0.97170 0.75614 0.72483 0.79320 0.79375 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.96 21.45 0.30 -54.77 15 2 C 0.03 1.57 5.47 84.65 0.46 2.03 15 3 Si 0.94 44.21 27.47 68.60 1.88 46.09 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.26 -12.37 6.54 99.48 0.65 -11.72 15 7 C -0.54 -29.65 9.83 25.60 0.25 -29.40 15 8 H 0.06 3.57 7.84 -2.91 -0.02 3.54 15 9 C 0.25 12.35 4.50 85.63 0.38 12.74 15 10 N -0.71 -28.13 5.55 -482.30 -2.68 -30.81 15 11 C 0.68 26.42 8.52 179.06 1.53 27.95 15 12 O -0.59 -28.25 14.61 -3.97 -0.06 -28.31 15 13 N -0.65 -17.44 5.40 -322.16 -1.74 -19.18 15 14 C 0.35 9.18 7.42 132.89 0.99 10.16 15 15 C -0.16 -2.47 9.94 22.49 0.22 -2.25 15 16 C -0.07 -0.96 10.16 22.48 0.23 -0.73 15 17 C 0.00 0.08 7.34 22.46 0.16 0.24 15 18 F -0.14 -2.72 17.28 44.97 0.78 -1.94 15 19 C 0.09 2.40 11.16 84.68 0.95 3.35 15 20 N -0.50 -16.48 7.88 -192.84 -1.52 -18.00 15 21 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 22 H 0.01 0.57 7.20 -2.39 -0.02 0.55 15 23 H 0.01 0.53 7.57 -2.39 -0.02 0.51 15 24 H 0.41 13.41 8.34 -92.71 -0.77 12.63 15 25 H 0.43 7.24 8.72 -92.71 -0.81 6.44 15 26 H 0.19 1.20 8.06 -2.91 -0.02 1.17 15 27 H 0.19 1.18 8.06 -2.91 -0.02 1.16 15 28 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -75.27 259.39 1.72 -73.54 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.42 Total: 9.28 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.17 Total: 24.09 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.64 Total: -122.75 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.06 Total: -28.31 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -75.27 1.72 -73.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334568952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.346 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds