Wall clock time and date at job start Sun Mar 29 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47291 * 270.00495 * 3 2 1 5 5 H 1.48504 * 109.47141 * 30.00366 * 3 2 1 6 6 H 1.48500 * 109.47297 * 150.00172 * 3 2 1 7 7 C 1.37874 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00071 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00043 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99967 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.39977 * 119.99778 * 184.66960 * 13 11 10 15 15 C 1.38904 * 120.47030 * 145.03240 * 14 13 11 16 16 N 1.31783 * 120.71496 * 179.97438 * 15 14 13 17 17 C 1.31862 * 121.82006 * 0.02562 * 16 15 14 18 18 C 1.38477 * 120.88455 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.40784 * 179.97438 * 18 17 16 20 20 C 1.38749 * 119.18161 * 359.97438 * 18 17 16 21 21 H 0.96998 * 120.00666 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47060 * 60.00349 * 9 7 2 23 23 H 1.09000 * 109.47344 * 300.00367 * 9 7 2 24 24 H 0.97003 * 120.00417 * 359.97438 * 10 9 7 25 25 H 0.96998 * 119.99980 * 4.66391 * 13 11 10 26 26 H 1.08003 * 119.64122 * 359.95890 * 15 14 13 27 27 H 1.07999 * 119.56002 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.82478 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0011 13 7 2.6298 -5.9077 -0.0005 14 6 2.1663 -7.2247 -0.0998 15 6 2.8998 -8.1792 -0.7929 16 7 2.4683 -9.4207 -0.8889 17 6 1.3342 -9.8071 -0.3382 18 6 0.5469 -8.9141 0.3691 19 9 -0.6135 -9.3202 0.9291 20 6 0.9646 -7.5970 0.4956 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.1568 -3.4353 -0.0009 25 1 3.5813 -5.7322 0.0685 26 1 3.8338 -7.9008 -1.2584 27 1 1.0151 -10.8338 -0.4400 28 1 0.3715 -6.8783 1.0417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335708789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:24 Heat of formation + Delta-G solvation = -39.363395 kcal Electronic energy + Delta-G solvation = -15950.039390 eV Core-core repulsion = 12915.703375 eV Total energy + Delta-G solvation = -3034.336015 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.97629 -40.68548 -39.07684 -35.14572 -34.30308 -32.56041 -31.66708 -29.95814 -27.19202 -24.24706 -23.47118 -22.37006 -20.57031 -18.67497 -18.10422 -17.08514 -16.95982 -16.11370 -15.84120 -15.75847 -14.96976 -14.80978 -14.16126 -13.92984 -13.54884 -13.27888 -13.10537 -12.46545 -12.09800 -12.07751 -11.06014 -11.00422 -10.79369 -10.41044 -10.12220 -9.62970 -9.48781 -9.26318 -8.86084 -8.45907 -7.97089 -6.24550 -4.32316 0.82032 1.07713 2.83750 3.19436 3.26138 3.28154 3.38342 3.70967 4.01543 4.24563 4.38007 4.60672 4.77130 4.85598 5.06103 5.11967 5.39556 5.75733 6.04094 6.24821 6.72385 6.80328 7.22843 7.36359 7.40830 7.67240 7.69339 7.88158 8.52946 8.70448 8.99254 9.34542 10.85520 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.056000 B = 0.004458 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.879622 B = 6279.086696 C = 6697.625407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.265 3.735 10 N -0.717 5.717 11 C 0.689 3.311 12 O -0.581 6.581 13 N -0.689 5.689 14 C 0.163 3.837 15 C 0.056 3.944 16 N -0.439 5.439 17 C 0.041 3.959 18 C 0.071 3.929 19 F -0.129 7.129 20 C -0.119 4.119 21 H 0.267 0.733 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.390 0.610 25 H 0.410 0.590 26 H 0.164 0.836 27 H 0.165 0.835 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 -14.440 0.414 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.368 5.368 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.337 5.337 14 C 0.063 3.937 15 C -0.106 4.106 16 N -0.146 5.146 17 C -0.119 4.119 18 C 0.049 3.951 19 F -0.108 7.108 20 C -0.148 4.148 21 H 0.077 0.923 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.223 0.777 25 H 0.246 0.754 26 H 0.181 0.819 27 H 0.182 0.818 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.003 -14.952 -0.030 16.112 hybrid contribution 0.549 1.745 0.573 1.917 sum 6.552 -13.207 0.542 14.753 Atomic orbital electron populations 1.69965 1.06122 1.27493 1.48514 1.24944 0.94936 0.99490 0.94579 0.86382 0.79574 0.82488 0.78270 1.20410 1.20943 1.19735 1.21181 0.93308 0.90238 1.53708 0.91804 1.19108 0.87684 0.80812 0.97986 1.45806 1.11355 1.03951 1.75659 1.16192 0.85060 0.81128 0.78695 1.90898 1.13881 1.83585 1.57480 1.42775 1.10452 1.02963 1.77553 1.18402 0.94827 0.85041 0.95433 1.22654 1.01514 0.88413 0.97977 1.67644 1.12944 1.17005 1.17029 1.22729 0.91364 1.00350 0.97423 1.18684 0.84504 0.93605 0.98344 1.91522 1.45575 1.90661 1.83020 1.21930 0.97915 0.94952 1.00052 0.92309 0.95353 0.95355 0.77674 0.75434 0.81874 0.81752 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.29 55.43 0.74 -24.68 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 7 C -0.55 -14.24 9.28 -34.44 -0.32 -14.55 15 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 15 9 C 0.26 6.71 5.43 -5.20 -0.03 6.69 15 10 N -0.72 -14.04 5.55 -66.42 -0.37 -14.41 15 11 C 0.69 13.01 8.42 -86.92 -0.73 12.28 15 12 O -0.58 -13.34 13.82 5.29 0.07 -13.27 15 13 N -0.69 -9.32 5.36 -14.13 -0.08 -9.40 15 14 C 0.16 2.22 6.32 -83.54 -0.53 1.69 15 15 C 0.06 0.64 11.12 -17.33 -0.19 0.45 15 16 N -0.44 -5.43 10.35 -13.03 -0.13 -5.56 15 17 C 0.04 0.48 11.17 -17.45 -0.19 0.28 15 18 C 0.07 0.95 7.34 -39.30 -0.29 0.67 15 19 F -0.13 -1.77 17.28 2.25 0.04 -1.73 15 20 C -0.12 -1.81 8.80 -39.04 -0.34 -2.15 15 21 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.39 6.31 8.34 -40.82 -0.34 5.97 15 25 H 0.41 3.88 8.84 -40.82 -0.36 3.52 15 26 H 0.16 1.37 8.06 -52.48 -0.42 0.95 15 27 H 0.17 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.17 2.88 6.32 -52.48 -0.33 2.55 15 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -31.48 261.64 -5.79 -37.27 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.26 Total: 5.58 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.72 Total: 6.99 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.16 Total: -54.04 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.48 -5.79 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335708789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.089 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds