Wall clock time and date at job start Sun Mar 29 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47291 * 270.00495 * 3 2 1 5 5 H 1.48504 * 109.47141 * 30.00366 * 3 2 1 6 6 H 1.48500 * 109.47297 * 150.00172 * 3 2 1 7 7 C 1.37874 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00071 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00043 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99967 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.39977 * 119.99778 * 184.66960 * 13 11 10 15 15 C 1.38904 * 120.47030 * 145.03240 * 14 13 11 16 16 N 1.31783 * 120.71496 * 179.97438 * 15 14 13 17 17 C 1.31862 * 121.82006 * 0.02562 * 16 15 14 18 18 C 1.38477 * 120.88455 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.40784 * 179.97438 * 18 17 16 20 20 C 1.38749 * 119.18161 * 359.97438 * 18 17 16 21 21 H 0.96998 * 120.00666 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47060 * 60.00349 * 9 7 2 23 23 H 1.09000 * 109.47344 * 300.00367 * 9 7 2 24 24 H 0.97003 * 120.00417 * 359.97438 * 10 9 7 25 25 H 0.96998 * 119.99980 * 4.66391 * 13 11 10 26 26 H 1.08003 * 119.64122 * 359.95890 * 15 14 13 27 27 H 1.07999 * 119.56002 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.82478 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0011 13 7 2.6298 -5.9077 -0.0005 14 6 2.1663 -7.2247 -0.0998 15 6 2.8998 -8.1792 -0.7929 16 7 2.4683 -9.4207 -0.8889 17 6 1.3342 -9.8071 -0.3382 18 6 0.5469 -8.9141 0.3691 19 9 -0.6135 -9.3202 0.9291 20 6 0.9646 -7.5970 0.4956 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.1568 -3.4353 -0.0009 25 1 3.5813 -5.7322 0.0685 26 1 3.8338 -7.9008 -1.2584 27 1 1.0151 -10.8338 -0.4400 28 1 0.3715 -6.8783 1.0417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335708789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:23 Heat of formation + Delta-G solvation = -63.240389 kcal Electronic energy + Delta-G solvation = -15951.074774 eV Core-core repulsion = 12915.703375 eV Total energy + Delta-G solvation = -3035.371399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.04546 -41.91916 -40.39482 -36.59947 -35.98765 -34.45710 -32.79731 -31.15403 -29.05608 -25.56127 -24.77558 -23.90085 -22.09441 -20.15319 -19.34267 -18.33685 -18.04723 -17.75656 -17.19884 -16.88013 -16.56835 -16.46598 -15.71684 -15.04043 -14.97168 -14.58323 -14.27387 -14.06827 -14.05963 -13.35451 -12.91850 -12.72946 -12.23319 -12.06826 -11.58163 -11.49174 -10.85419 -10.80140 -10.43967 -10.00639 -9.36350 -8.29620 -6.46024 -0.19095 -0.02064 1.43047 1.46616 1.52254 1.59107 1.97984 2.38068 2.59977 2.94598 3.06210 3.28061 3.48747 3.72906 3.79560 3.95027 4.41080 4.77587 4.93449 5.01650 5.14591 5.23554 5.42258 5.56425 5.63753 5.80657 6.06057 6.64768 6.70374 7.08413 7.23845 7.49857 8.82468 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.056000 B = 0.004458 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.879622 B = 6279.086696 C = 6697.625407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.283 3.717 10 N -0.710 5.710 11 C 0.691 3.309 12 O -0.627 6.627 13 N -0.663 5.663 14 C 0.144 3.856 15 C 0.079 3.921 16 N -0.445 5.445 17 C 0.058 3.942 18 C 0.059 3.941 19 F -0.135 7.135 20 C -0.140 4.140 21 H 0.269 0.731 22 H -0.010 1.010 23 H -0.010 1.010 24 H 0.410 0.590 25 H 0.432 0.568 26 H 0.203 0.797 27 H 0.198 0.802 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -15.120 -0.209 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.160 3.840 10 N -0.363 5.363 11 C 0.391 3.609 12 O -0.507 6.507 13 N -0.314 5.314 14 C 0.045 3.955 15 C -0.082 4.082 16 N -0.153 5.153 17 C -0.101 4.101 18 C 0.037 3.963 19 F -0.113 7.113 20 C -0.169 4.169 21 H 0.078 0.922 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.247 0.753 25 H 0.273 0.727 26 H 0.220 0.780 27 H 0.214 0.786 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.931 -15.695 -0.650 18.070 hybrid contribution -0.358 1.803 0.764 1.991 sum 8.573 -13.891 0.114 16.325 Atomic orbital electron populations 1.70130 1.08274 1.28610 1.49904 1.26042 0.95744 1.03857 0.93907 0.85155 0.78510 0.76990 0.78546 1.19683 1.21189 1.17796 1.21595 0.94458 0.90278 1.52919 0.89489 1.18502 0.88044 0.83030 0.94404 1.45305 1.11482 1.03240 1.76238 1.16276 0.84955 0.81638 0.78017 1.90883 1.16359 1.84333 1.59150 1.42288 1.10795 1.01828 1.76447 1.18556 0.95039 0.85128 0.96762 1.23177 1.01829 0.87326 0.95823 1.67812 1.13068 1.17125 1.17271 1.23208 0.90376 1.01241 0.95229 1.18785 0.84872 0.93350 0.99314 1.91505 1.45971 1.90609 1.83251 1.21856 0.98745 0.95422 1.00923 0.92247 0.99237 0.99188 0.75337 0.72712 0.78043 0.78560 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.73 15 2 C 0.00 0.23 5.46 84.65 0.46 0.69 15 3 Si 0.98 41.08 29.54 68.60 2.03 43.10 15 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 5 H -0.29 -11.95 7.11 99.48 0.71 -11.25 15 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 15 7 C -0.55 -28.91 9.28 25.60 0.24 -28.67 15 8 H 0.09 4.03 7.60 -2.91 -0.02 4.01 15 9 C 0.28 14.92 5.43 85.63 0.46 15.38 15 10 N -0.71 -27.91 5.55 -482.30 -2.68 -30.59 15 11 C 0.69 26.39 8.42 179.05 1.51 27.90 15 12 O -0.63 -30.18 13.82 -4.00 -0.06 -30.24 15 13 N -0.66 -17.04 5.36 -316.88 -1.70 -18.74 15 14 C 0.14 3.74 6.32 38.23 0.24 3.98 15 15 C 0.08 1.57 11.12 84.86 0.94 2.51 15 16 N -0.45 -9.54 10.35 -195.14 -2.02 -11.56 15 17 C 0.06 1.22 11.17 84.75 0.95 2.17 15 18 C 0.06 1.55 7.34 22.45 0.16 1.72 15 19 F -0.13 -3.71 17.28 44.97 0.78 -2.93 15 20 C -0.14 -4.32 8.80 22.62 0.20 -4.12 15 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 22 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 24 H 0.41 12.65 8.34 -92.71 -0.77 11.88 15 25 H 0.43 6.99 8.84 -92.71 -0.82 6.17 15 26 H 0.20 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.20 2.79 8.06 -2.91 -0.02 2.76 15 28 H 0.13 5.01 6.32 -2.91 -0.02 4.99 15 Total: -1.00 -71.13 261.64 1.44 -69.69 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -0.37 Total: 14.42 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 5.17 Total: 21.57 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -6.11 Total: -115.62 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.06 Total: -30.24 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -71.13 1.44 -69.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335708789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.451 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds