Wall clock time and date at job start Sun Mar 29 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99761 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.38264 * 119.93461 * 269.71993 * 13 12 11 15 15 C 1.38186 * 120.09377 * 179.77345 * 14 13 12 16 16 C 1.38655 * 119.96828 * 0.50516 * 15 14 13 17 17 O 1.35961 * 120.06106 * 179.72969 * 16 15 14 18 18 C 1.38908 * 119.87626 * 359.74846 * 16 15 14 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 16 15 20 20 C 1.38254 * 119.94064 * 90.00329 * 13 12 11 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.08002 * 119.95263 * 0.02562 * 14 13 12 26 26 H 1.08001 * 120.01031 * 180.25555 * 15 14 13 27 27 H 0.96703 * 113.99570 * 270.01518 * 17 16 15 28 28 H 1.08005 * 119.98317 * 359.95036 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.6399 -6.5842 -1.2118 15 6 3.5415 -7.6314 -1.2207 16 6 3.9938 -8.1661 -0.0241 17 8 4.8767 -9.2000 -0.0307 18 6 3.5430 -7.6437 1.1815 19 9 3.9810 -8.1624 2.3495 20 6 2.6444 -6.5920 1.1844 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 0.5900 -4.9784 0.8842 24 1 0.5899 -4.9699 -0.8957 25 1 2.2846 -6.1705 -2.1441 26 1 3.8905 -8.0357 -2.1594 27 1 4.4602 -10.0728 -0.0352 28 1 2.2932 -6.1847 2.1210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335889092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:33 Heat of formation + Delta-G solvation = -107.071843 kcal Electronic energy + Delta-G solvation = -15952.069520 eV Core-core repulsion = 12882.504695 eV Total energy + Delta-G solvation = -3069.564825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.90619 -39.70557 -37.65878 -36.69677 -33.40856 -32.33205 -30.77966 -29.95608 -26.73720 -24.80421 -23.00503 -21.60633 -19.72466 -18.73683 -17.61237 -16.78654 -16.59088 -16.07994 -15.36980 -15.16282 -14.59062 -14.16977 -14.02440 -13.96857 -13.35539 -13.15945 -12.36775 -12.32307 -11.94597 -11.42642 -11.35406 -11.14155 -10.89005 -10.70945 -10.47417 -10.27136 -9.02722 -8.86857 -8.66087 -7.64339 -7.58587 -6.21198 -4.67117 0.93841 1.08569 3.15184 3.19964 3.21775 3.34796 3.84120 4.10441 4.21777 4.55331 4.66129 4.80243 5.06470 5.16842 5.23039 5.62239 5.68524 5.89130 5.89904 6.07920 6.12118 6.30578 6.63240 6.65339 7.38807 7.41238 7.87355 8.01556 8.29045 8.99778 9.47410 10.56218 10.74161 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043164 B = 0.004704 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.528500 B = 5950.693256 C = 6042.071145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.168 3.832 13 C -0.065 4.065 14 C -0.098 4.098 15 C -0.118 4.118 16 C 0.065 3.935 17 O -0.490 6.490 18 C 0.071 3.929 19 F -0.136 7.136 20 C -0.125 4.125 21 H 0.269 0.731 22 H 0.382 0.618 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.389 0.611 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 -14.506 -1.169 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.420 5.420 12 C 0.044 3.956 13 C -0.065 4.065 14 C -0.117 4.117 15 C -0.137 4.137 16 C 0.019 3.981 17 O -0.300 6.300 18 C 0.051 3.949 19 F -0.114 7.114 20 C -0.144 4.144 21 H 0.080 0.920 22 H 0.214 0.786 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.244 0.756 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.046 -13.966 -1.115 15.259 hybrid contribution 0.746 0.222 0.246 0.816 sum 6.792 -13.744 -0.869 15.355 Atomic orbital electron populations 1.70005 1.07063 1.27455 1.35150 1.25711 0.94637 1.00309 0.92586 0.86416 0.79802 0.80938 0.79489 1.19259 1.20544 1.19257 1.20843 0.93605 0.89264 1.54437 0.91401 1.18248 0.87208 0.82280 0.76366 1.90606 1.14050 1.86650 1.54986 1.46224 1.08688 1.04069 1.82993 1.19835 0.91899 0.81851 1.02025 1.20141 0.97541 0.96854 0.91986 1.21141 0.96501 0.95529 0.98541 1.21302 0.97237 0.97946 0.97197 1.18422 0.94727 0.93684 0.91233 1.84884 1.32664 1.16097 1.96314 1.18090 0.98463 0.97356 0.80966 1.91486 1.88205 1.85863 1.45893 1.21112 0.97522 0.95618 1.00161 0.91994 0.78649 0.92089 0.91891 0.84497 0.84441 0.75592 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.83 55.55 0.66 -22.23 15 2 C 0.09 2.43 5.50 -17.36 -0.10 2.33 15 3 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 15 7 C -0.54 -15.26 9.54 -35.63 -0.34 -15.60 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.55 15.56 7.75 -12.99 -0.10 15.46 15 10 O -0.58 -18.53 15.02 5.20 0.08 -18.45 15 11 N -0.76 -16.68 5.54 -62.90 -0.35 -17.03 15 12 C 0.17 3.08 5.80 -5.19 -0.03 3.05 15 13 C -0.06 -0.93 5.25 -104.61 -0.55 -1.48 15 14 C -0.10 -1.22 9.69 -39.59 -0.38 -1.61 15 15 C -0.12 -1.32 9.98 -39.45 -0.39 -1.71 15 16 C 0.06 0.79 6.71 -39.18 -0.26 0.53 15 17 O -0.49 -5.29 13.37 -19.62 -0.26 -5.55 15 18 C 0.07 0.96 7.31 -39.30 -0.29 0.67 15 19 F -0.14 -1.93 17.11 2.25 0.04 -1.89 15 20 C -0.12 -1.74 9.67 -39.54 -0.38 -2.12 15 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 15 22 H 0.38 7.51 8.44 -40.82 -0.34 7.17 15 23 H 0.06 1.17 8.08 -51.93 -0.42 0.75 15 24 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 25 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.39 2.22 9.06 45.56 0.41 2.63 15 28 H 0.14 1.91 8.06 -52.48 -0.42 1.49 15 LS Contribution 264.94 15.07 3.99 3.99 Total: -1.00 -34.68 264.94 -5.28 -39.96 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.59 Total: 6.66 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.83 Total: -0.47 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.31 Total: -39.26 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.18 Total: -24.00 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.68 -5.28 -39.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335889092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.107 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds