Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99761 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.38264 * 119.93461 * 269.71993 * 13 12 11 15 15 C 1.38186 * 120.09377 * 179.77345 * 14 13 12 16 16 C 1.38655 * 119.96828 * 0.50516 * 15 14 13 17 17 O 1.35961 * 120.06106 * 179.72969 * 16 15 14 18 18 C 1.38908 * 119.87626 * 359.74846 * 16 15 14 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 16 15 20 20 C 1.38254 * 119.94064 * 90.00329 * 13 12 11 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.08002 * 119.95263 * 0.02562 * 14 13 12 26 26 H 1.08001 * 120.01031 * 180.25555 * 15 14 13 27 27 H 0.96703 * 113.99570 * 270.01518 * 17 16 15 28 28 H 1.08005 * 119.98317 * 359.95036 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.6399 -6.5842 -1.2118 15 6 3.5415 -7.6314 -1.2207 16 6 3.9938 -8.1661 -0.0241 17 8 4.8767 -9.2000 -0.0307 18 6 3.5430 -7.6437 1.1815 19 9 3.9810 -8.1624 2.3495 20 6 2.6444 -6.5920 1.1844 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 0.5900 -4.9784 0.8842 24 1 0.5899 -4.9699 -0.8957 25 1 2.2846 -6.1705 -2.1441 26 1 3.8905 -8.0357 -2.1594 27 1 4.4602 -10.0728 -0.0352 28 1 2.2932 -6.1847 2.1210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335889092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -134.133736 kcal Electronic energy + Delta-G solvation = -15953.243012 eV Core-core repulsion = 12882.504695 eV Total energy + Delta-G solvation = -3070.738317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.96885 -40.75443 -39.35985 -37.99874 -35.18371 -34.41003 -31.83785 -31.32014 -28.62544 -26.35144 -24.01197 -22.80874 -21.70520 -19.65667 -19.40926 -17.97442 -17.77960 -17.40407 -17.07236 -16.31676 -16.10002 -15.91298 -15.40626 -14.97095 -14.82730 -14.47503 -14.18231 -13.62115 -13.25144 -12.99641 -12.89773 -12.68355 -12.64162 -12.48679 -12.04621 -11.63703 -10.91728 -10.10585 -9.92604 -9.56758 -9.51649 -8.28958 -6.85927 -0.08610 0.08399 1.41378 1.44425 1.56244 2.23029 2.35161 2.46815 2.89532 3.25711 3.30974 3.59258 3.61909 3.78208 4.15315 4.17689 4.51833 4.65744 4.80435 4.91982 4.99516 5.10702 5.32196 5.47244 5.67606 5.86604 6.17912 6.24942 6.69790 6.86726 7.51386 8.47479 8.66462 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043164 B = 0.004704 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.528500 B = 5950.693256 C = 6042.071145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.750 5.750 12 C 0.173 3.827 13 C -0.077 4.077 14 C -0.091 4.091 15 C -0.107 4.107 16 C 0.080 3.920 17 O -0.497 6.497 18 C 0.055 3.945 19 F -0.143 7.143 20 C -0.127 4.127 21 H 0.275 0.725 22 H 0.394 0.606 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.149 0.851 26 H 0.171 0.829 27 H 0.413 0.587 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.925 -14.963 -2.035 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.518 6.518 11 N -0.405 5.405 12 C 0.049 3.951 13 C -0.078 4.078 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.034 3.966 17 O -0.310 6.310 18 C 0.035 3.965 19 F -0.121 7.121 20 C -0.147 4.147 21 H 0.085 0.915 22 H 0.228 0.772 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.167 0.833 26 H 0.188 0.812 27 H 0.273 0.727 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.295 -14.497 -1.979 16.819 hybrid contribution 0.099 0.185 0.509 0.551 sum 8.394 -14.312 -1.470 16.657 Atomic orbital electron populations 1.70171 1.09485 1.29074 1.36331 1.26965 0.95533 1.04919 0.91194 0.85073 0.78203 0.74759 0.80274 1.17754 1.19889 1.17991 1.21404 0.94750 0.90067 1.54800 0.89496 1.18590 0.86819 0.84175 0.76072 1.90559 1.16105 1.87851 1.57272 1.45864 1.09244 1.04114 1.81302 1.19790 0.92569 0.81742 1.00953 1.19707 0.98243 0.96565 0.93267 1.21281 0.96189 0.95447 0.98027 1.21545 0.96046 0.96813 0.98106 1.18517 0.93571 0.93664 0.90878 1.84822 1.32825 1.17213 1.96174 1.18199 0.99122 0.97753 0.81425 1.91466 1.88321 1.85932 1.46406 1.21041 0.97799 0.95977 0.99847 0.91494 0.77224 0.93625 0.92560 0.83311 0.81193 0.72699 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.12 11.83 21.84 0.26 -49.87 15 2 C 0.03 1.62 5.50 85.30 0.47 2.09 15 3 Si 1.00 40.73 29.56 68.60 2.03 42.76 15 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 7 C -0.57 -32.39 9.54 24.83 0.24 -32.15 15 8 H 0.09 4.40 7.85 -2.91 -0.02 4.37 15 9 C 0.54 31.05 7.75 86.36 0.67 31.72 15 10 O -0.63 -41.95 15.02 -4.33 -0.06 -42.01 15 11 N -0.75 -33.27 5.54 -471.15 -2.61 -35.89 15 12 C 0.17 6.50 5.80 85.63 0.50 6.99 15 13 C -0.08 -2.18 5.25 -19.85 -0.10 -2.28 15 14 C -0.09 -2.06 9.69 22.26 0.22 -1.84 15 15 C -0.11 -2.00 9.98 22.36 0.22 -1.78 15 16 C 0.08 1.71 6.71 22.53 0.15 1.86 15 17 O -0.50 -9.02 13.37 -93.11 -1.24 -10.27 15 18 C 0.05 1.40 7.31 22.45 0.16 1.57 15 19 F -0.14 -3.89 17.11 44.97 0.77 -3.12 15 20 C -0.13 -3.49 9.67 22.30 0.22 -3.27 15 21 H 0.28 15.21 8.29 -92.71 -0.77 14.45 15 22 H 0.39 15.42 8.44 -92.71 -0.78 14.64 15 23 H 0.05 1.83 8.08 -2.38 -0.02 1.81 15 24 H 0.06 2.17 8.08 -2.39 -0.02 2.15 15 25 H 0.15 3.02 8.06 -2.91 -0.02 3.00 15 26 H 0.17 2.13 8.06 -2.91 -0.02 2.11 15 27 H 0.41 3.21 9.06 -74.06 -0.67 2.53 15 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -76.58 264.94 1.64 -74.94 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.23 Total: 20.55 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 2.74 Total: 2.90 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.35 Total: -85.75 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -1.31 Total: -52.28 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.77 Total: -3.12 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -76.58 1.64 -74.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335889092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.189 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds