Wall clock time and date at job start Sun Mar 29 2020 22:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47215 * 2 1 4 4 C 1.50696 * 109.47382 * 240.00496 * 2 1 3 5 5 O 1.21297 * 119.99779 * 262.02512 * 4 2 1 6 6 N 1.34774 * 120.00608 * 82.02540 * 4 2 1 7 7 C 1.46497 * 120.00608 * 184.03764 * 6 4 2 8 8 C 1.37106 * 119.99584 * 4.03561 * 6 4 2 9 9 H 1.07997 * 119.99814 * 8.22577 * 8 6 4 10 10 C 1.38948 * 120.00034 * 188.22310 * 8 6 4 11 11 N 1.31419 * 119.99907 * 10.89370 * 10 8 6 12 12 Si 1.86799 * 120.00062 * 190.89424 * 10 8 6 13 13 H 1.48497 * 109.47016 * 60.00122 * 12 10 8 14 14 H 1.48503 * 109.46724 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47098 * 300.00017 * 12 10 8 16 16 C 1.50700 * 109.47338 * 120.00132 * 2 1 3 17 17 C 1.38426 * 122.54119 * 240.00686 * 16 2 1 18 18 C 1.33387 * 114.92030 * 179.97438 * 17 16 2 19 19 S 1.75879 * 109.59296 * 359.97438 * 18 17 16 20 20 C 1.33385 * 122.53726 * 59.70878 * 16 2 1 21 21 H 1.09003 * 109.46693 * 55.00809 * 1 2 3 22 22 H 1.09001 * 109.46904 * 175.00264 * 1 2 3 23 23 H 1.08993 * 109.47226 * 295.01213 * 1 2 3 24 24 H 1.09007 * 109.46935 * 355.68861 * 7 6 4 25 25 H 1.08993 * 109.47377 * 115.68755 * 7 6 4 26 26 H 1.09004 * 109.47105 * 235.69165 * 7 6 4 27 27 H 0.97000 * 120.00001 * 179.97438 * 11 10 8 28 28 H 1.08004 * 122.53728 * 359.94908 * 17 16 2 29 29 H 1.08002 * 125.19845 * 179.97438 * 18 17 16 30 30 H 1.08004 * 125.20202 * 0.02705 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3720 -1.8728 -1.1635 6 7 2.1044 -0.0539 -2.4054 7 6 2.5083 -0.7673 -3.6195 8 6 1.7996 1.2816 -2.4643 9 1 1.6317 1.8377 -1.5539 10 6 1.7070 1.9194 -3.6952 11 7 1.6975 1.2120 -4.8028 12 14 1.5958 3.7823 -3.7759 13 1 2.8054 4.3777 -3.1535 14 1 1.5072 4.2118 -5.1947 15 1 0.3870 4.2382 -3.0437 16 6 2.0324 -0.7104 1.2304 17 6 2.8306 -0.0890 2.1753 18 6 3.1875 -0.8595 3.2040 19 16 2.4972 -2.4649 3.0057 20 6 1.7368 -1.9840 1.4944 21 1 -0.3633 0.5894 -0.8419 22 1 -0.3633 -1.0238 -0.0895 23 1 -0.3633 0.4345 0.9312 24 1 2.7822 -1.7912 -3.3652 25 1 1.6795 -0.7781 -4.3273 26 1 3.3638 -0.2634 -4.0694 27 1 1.6324 1.6572 -5.6621 28 1 3.1412 0.9416 2.0861 29 1 3.8058 -0.5454 4.0319 30 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335997066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:34 Heat of formation + Delta-G solvation = 7.413516 kcal Electronic energy + Delta-G solvation = -15082.719405 eV Core-core repulsion = 12584.332214 eV Total energy + Delta-G solvation = -2498.387191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.17974 -37.17655 -34.70843 -32.39136 -31.34188 -28.35249 -26.43583 -24.93660 -24.19122 -21.84468 -19.15746 -18.35659 -17.41293 -16.64036 -15.90363 -14.78706 -14.36483 -14.00505 -13.88863 -13.10227 -12.96837 -12.56791 -12.25603 -11.93364 -11.76679 -11.66581 -11.33294 -11.03250 -10.97322 -10.79903 -10.58654 -10.42800 -10.40463 -10.01522 -9.15643 -8.38574 -8.28983 -7.90833 -7.85841 -6.28117 -3.90853 1.46898 2.07008 2.37950 3.09251 3.16020 3.18016 3.19685 3.92082 4.05857 4.86266 5.08112 5.29768 5.53145 5.76847 5.82737 5.97593 6.07891 6.18026 6.35081 6.43297 6.56053 6.73637 6.79618 6.98094 7.07701 7.17938 7.38336 7.51891 7.76191 8.38881 9.06652 9.54815 9.94227 10.63959 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038825 B = 0.006914 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.016235 B = 4048.537653 C = 4421.163134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.037 4.037 3 H 0.093 0.907 4 C 0.457 3.543 5 O -0.608 6.608 6 N -0.442 5.442 7 C 0.115 3.885 8 C -0.332 4.332 9 H 0.101 0.899 10 C 0.034 3.966 11 N -0.874 5.874 12 Si 0.924 3.076 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.272 1.272 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.226 4.226 19 S 0.052 5.948 20 C -0.158 4.158 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.267 0.733 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -0.226 10.152 10.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.061 4.061 3 H 0.111 0.889 4 C 0.245 3.755 5 O -0.495 6.495 6 N -0.159 5.159 7 C -0.028 4.028 8 C -0.460 4.460 9 H 0.118 0.882 10 C -0.170 4.170 11 N -0.513 5.513 12 Si 0.750 3.250 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.100 4.100 17 C -0.149 4.149 18 C -0.361 4.361 19 S 0.314 5.686 20 C -0.293 4.293 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.175 0.825 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.459 -2.087 10.763 10.973 hybrid contribution 0.038 2.406 -1.098 2.645 sum -0.421 0.320 9.665 9.679 Atomic orbital electron populations 1.21617 0.93058 1.02067 1.01938 1.19768 0.96789 0.99493 0.90078 0.88884 1.19760 0.83991 0.86946 0.84814 1.90506 1.55792 1.17658 1.85529 1.43641 1.56664 1.09132 1.06493 1.21575 1.01218 0.93331 0.86636 1.19703 1.48105 0.83956 0.94216 0.88166 1.25285 0.96425 1.00326 0.94961 1.70124 1.47957 1.35148 0.98077 0.86048 0.78990 0.82426 0.77540 1.19882 1.20804 1.19729 1.18669 1.00057 0.94287 0.97034 1.20129 0.99620 1.01164 0.94036 1.25337 1.09429 0.96720 1.04625 1.83968 1.49287 1.13998 1.21299 1.25386 1.06273 0.99103 0.98523 0.90956 0.92946 0.92812 0.94470 0.90001 0.93564 0.92169 0.84546 0.82466 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.89 37.16 0.33 -1.96 16 2 C -0.04 -0.75 2.18 -92.93 -0.20 -0.95 16 3 H 0.09 1.81 6.25 -51.93 -0.32 1.49 16 4 C 0.46 11.15 6.75 -10.99 -0.07 11.07 16 5 O -0.61 -16.10 14.21 5.54 0.08 -16.02 16 6 N -0.44 -11.36 3.03 -122.19 -0.37 -11.73 16 7 C 0.12 2.94 8.90 59.85 0.53 3.47 16 8 C -0.33 -8.32 8.85 -14.93 -0.13 -8.45 16 9 H 0.10 2.33 5.82 -52.49 -0.31 2.02 16 10 C 0.03 0.85 5.35 -17.47 -0.09 0.76 16 11 N -0.87 -22.70 9.79 55.50 0.54 -22.16 16 12 Si 0.92 19.21 29.57 -169.99 -5.03 14.18 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 C -0.09 -1.65 4.50 -106.25 -0.48 -2.13 16 17 C -0.12 -1.91 9.92 -41.21 -0.41 -2.32 16 18 C -0.23 -3.24 11.23 29.04 0.33 -2.92 16 19 S 0.05 0.78 23.34 -107.50 -2.51 -1.73 16 20 C -0.16 -2.84 9.16 29.04 0.27 -2.57 16 21 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 22 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.93 6.91 -51.93 -0.36 0.57 16 25 H 0.08 2.15 6.54 -51.93 -0.34 1.81 16 26 H 0.05 1.19 7.65 -51.93 -0.40 0.79 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.16 3.04 7.69 -52.48 -0.40 2.63 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -28.45 266.07 -6.55 -35.01 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.35 Total: 4.44 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.07 Total: -6.00 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.17 Total: -33.89 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.45 -6.55 -35.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335997066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.419 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds