Wall clock time and date at job start Sun Mar 29 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47521 * 2 1 4 4 C 1.50699 * 109.46898 * 120.00078 * 2 1 3 5 5 C 1.33852 * 124.51552 * 119.72047 * 4 2 1 6 6 C 1.37449 * 115.10639 * 180.26468 * 5 4 2 7 7 C 1.36770 * 113.27818 * 0.02562 * 6 5 4 8 8 C 1.46458 * 125.45685 * 180.02562 * 7 6 5 9 9 O 1.21740 * 120.00394 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99436 * 179.97438 * 8 7 6 11 11 C 1.36885 * 119.99630 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00194 * 359.97438 * 11 10 8 13 13 C 1.39013 * 119.99734 * 179.97438 * 11 10 8 14 14 N 1.31402 * 120.00182 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99889 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47083 * 90.00043 * 15 13 11 17 17 H 1.48501 * 109.47247 * 210.00075 * 15 13 11 18 18 H 1.48499 * 109.47289 * 330.00347 * 15 13 11 19 19 S 1.70618 * 124.51566 * 300.02200 * 4 2 1 20 20 H 1.09010 * 109.47015 * 60.00153 * 1 2 3 21 21 H 1.08994 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47344 * 300.00620 * 1 2 3 23 23 H 1.09004 * 109.47344 * 239.99380 * 2 1 3 24 24 H 1.09002 * 109.47186 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47163 * 299.99398 * 3 2 1 26 26 H 1.09002 * 109.47065 * 59.99833 * 3 2 1 27 27 H 1.07998 * 122.44720 * 0.24122 * 5 4 2 28 28 H 1.07997 * 123.35732 * 179.97438 * 6 5 4 29 29 H 0.96997 * 120.00536 * 359.97438 * 10 8 7 30 30 H 0.96992 * 119.99960 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8006 -1.8063 1.2130 6 6 3.1428 -2.2985 2.4499 7 6 2.6270 -1.5671 3.4842 8 6 2.8240 -1.8519 4.9072 9 8 3.4945 -2.8087 5.2495 10 7 2.2629 -1.0547 5.8379 11 6 2.4474 -1.3205 7.1679 12 1 3.0421 -2.1693 7.4715 13 6 1.8691 -0.4980 8.1278 14 7 1.1458 0.5350 7.7584 15 14 2.1202 -0.8611 9.9429 16 1 3.3333 -0.1538 10.4260 17 1 0.9370 -0.3946 10.7094 18 1 2.2901 -2.3236 10.1362 19 16 1.6913 -0.2293 2.8315 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 3.1301 1.4423 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1274 -2.2703 0.2941 28 1 3.7568 -3.1756 2.5909 29 1 1.7290 -0.2922 5.5652 30 1 0.7421 1.1087 8.4282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336014678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:50 Heat of formation + Delta-G solvation = -26.719839 kcal Electronic energy + Delta-G solvation = -14337.611011 eV Core-core repulsion = 11837.743686 eV Total energy + Delta-G solvation = -2499.867324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.48432 -37.50164 -34.86911 -33.98955 -31.39825 -28.65607 -27.19779 -25.54597 -23.86109 -21.11078 -20.56085 -18.74174 -17.80945 -16.94896 -15.43362 -15.00338 -14.31808 -14.26041 -13.91628 -13.89117 -13.35812 -13.24310 -12.49813 -12.39367 -11.85850 -11.84788 -11.60670 -11.20989 -11.18628 -11.08963 -11.02962 -10.49813 -10.38573 -10.21630 -9.66713 -8.61323 -8.19455 -8.10157 -8.05848 -6.59017 -3.91916 1.10527 2.00701 2.45253 2.92545 3.17241 3.20281 3.26601 4.06680 4.23187 4.70296 4.89784 4.92352 5.11760 5.23000 5.44680 5.55724 5.73089 5.77720 5.78276 5.89842 6.04197 6.13459 6.18769 6.20207 6.49611 6.75872 6.87920 7.39839 7.91167 8.44784 9.01147 9.35633 9.90503 10.57621 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.006076 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.888622 B = 4607.057087 C = 5132.188051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.148 4.148 4 C -0.224 4.224 5 C -0.140 4.140 6 C -0.103 4.103 7 C -0.207 4.207 8 C 0.493 3.507 9 O -0.589 6.589 10 N -0.542 5.542 11 C -0.294 4.294 12 H 0.110 0.890 13 C 0.023 3.977 14 N -0.887 5.887 15 Si 0.937 3.063 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.267 1.267 19 S 0.183 5.817 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.392 0.608 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 2.689 -13.251 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.041 4.041 3 C -0.206 4.206 4 C -0.344 4.344 5 C -0.172 4.172 6 C -0.135 4.135 7 C -0.328 4.328 8 C 0.280 3.720 9 O -0.477 6.477 10 N -0.176 5.176 11 C -0.424 4.424 12 H 0.128 0.872 13 C -0.180 4.180 14 N -0.526 5.526 15 Si 0.763 3.237 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.191 1.191 19 S 0.450 5.550 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.227 0.773 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.391 3.398 -12.226 12.913 hybrid contribution 0.622 -0.866 0.005 1.066 sum -1.769 2.533 -12.221 12.605 Atomic orbital electron populations 1.21934 0.94305 1.02300 1.02032 1.19623 0.95612 0.95390 0.93450 1.21932 1.01556 0.95056 1.02027 1.24031 1.07530 1.02848 0.99985 1.19836 1.01634 0.97267 0.98428 1.20543 1.01569 1.01158 0.90201 1.25113 1.07284 1.01547 0.98886 1.16585 0.86270 0.86284 0.82811 1.90650 1.44950 1.31430 1.80624 1.41882 1.43936 1.25611 1.06151 1.19862 1.29802 1.12321 0.80394 0.87224 1.25419 0.96002 0.95311 1.01305 1.69613 1.31920 1.15316 1.35792 0.85743 0.77932 0.79220 0.80800 1.20077 1.20646 1.19094 1.83050 1.48777 1.27671 0.95529 0.92264 0.92251 0.92236 0.89988 0.92252 0.92266 0.92240 0.84993 0.83766 0.77345 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.08 37.16 0.34 -1.21 16 2 C -0.02 -0.23 3.25 -91.78 -0.30 -0.53 16 3 C -0.15 -1.55 9.08 37.15 0.34 -1.21 16 4 C -0.22 -3.31 4.95 -35.85 -0.18 -3.49 16 5 C -0.14 -2.16 9.95 -41.41 -0.41 -2.57 16 6 C -0.10 -1.92 10.02 -40.40 -0.40 -2.32 16 7 C -0.21 -4.39 6.45 -36.80 -0.24 -4.63 16 8 C 0.49 12.80 7.73 -12.95 -0.10 12.70 16 9 O -0.59 -17.08 16.41 5.15 0.08 -17.00 16 10 N -0.54 -14.44 5.27 -12.23 -0.06 -14.50 16 11 C -0.29 -8.25 9.68 -15.01 -0.15 -8.40 16 12 H 0.11 3.19 7.15 -52.49 -0.38 2.81 16 13 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 14 N -0.89 -23.79 13.05 55.50 0.72 -23.06 16 15 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 S 0.18 3.16 21.36 -107.50 -2.30 0.86 16 20 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 23 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 29 H 0.39 9.99 7.00 -40.82 -0.29 9.70 16 30 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -30.49 277.67 -7.16 -37.65 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.57 Total: 7.44 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.20 Total: -11.13 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.66 Total: -37.57 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.30 Total: 0.86 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.49 -7.16 -37.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336014678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.929 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds