Wall clock time and date at job start Sun Mar 29 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47521 * 2 1 4 4 C 1.50699 * 109.46898 * 120.00078 * 2 1 3 5 5 C 1.33852 * 124.51552 * 119.72047 * 4 2 1 6 6 C 1.37449 * 115.10639 * 180.26468 * 5 4 2 7 7 C 1.36770 * 113.27818 * 0.02562 * 6 5 4 8 8 C 1.46458 * 125.45685 * 180.02562 * 7 6 5 9 9 O 1.21740 * 120.00394 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99436 * 179.97438 * 8 7 6 11 11 C 1.36885 * 119.99630 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00194 * 359.97438 * 11 10 8 13 13 C 1.39013 * 119.99734 * 179.97438 * 11 10 8 14 14 N 1.31402 * 120.00182 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99889 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47083 * 90.00043 * 15 13 11 17 17 H 1.48501 * 109.47247 * 210.00075 * 15 13 11 18 18 H 1.48499 * 109.47289 * 330.00347 * 15 13 11 19 19 S 1.70618 * 124.51566 * 300.02200 * 4 2 1 20 20 H 1.09010 * 109.47015 * 60.00153 * 1 2 3 21 21 H 1.08994 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47344 * 300.00620 * 1 2 3 23 23 H 1.09004 * 109.47344 * 239.99380 * 2 1 3 24 24 H 1.09002 * 109.47186 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47163 * 299.99398 * 3 2 1 26 26 H 1.09002 * 109.47065 * 59.99833 * 3 2 1 27 27 H 1.07998 * 122.44720 * 0.24122 * 5 4 2 28 28 H 1.07997 * 123.35732 * 179.97438 * 6 5 4 29 29 H 0.96997 * 120.00536 * 359.97438 * 10 8 7 30 30 H 0.96992 * 119.99960 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8006 -1.8063 1.2130 6 6 3.1428 -2.2985 2.4499 7 6 2.6270 -1.5671 3.4842 8 6 2.8240 -1.8519 4.9072 9 8 3.4945 -2.8087 5.2495 10 7 2.2629 -1.0547 5.8379 11 6 2.4474 -1.3205 7.1679 12 1 3.0421 -2.1693 7.4715 13 6 1.8691 -0.4980 8.1278 14 7 1.1458 0.5350 7.7584 15 14 2.1202 -0.8611 9.9429 16 1 3.3333 -0.1538 10.4260 17 1 0.9370 -0.3946 10.7094 18 1 2.2901 -2.3236 10.1362 19 16 1.6913 -0.2293 2.8315 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 3.1301 1.4423 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1274 -2.2703 0.2941 28 1 3.7568 -3.1756 2.5909 29 1 1.7290 -0.2922 5.5652 30 1 0.7421 1.1087 8.4282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336014678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:50 Heat of formation + Delta-G solvation = -45.997022 kcal Electronic energy + Delta-G solvation = -14338.446932 eV Core-core repulsion = 11837.743686 eV Total energy + Delta-G solvation = -2500.703246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33176 -38.93346 -36.24798 -35.79947 -33.45007 -30.13825 -28.00076 -27.35650 -25.42334 -22.45709 -21.94974 -20.59696 -19.52348 -18.62265 -16.94396 -16.78485 -15.96004 -15.71152 -15.59026 -15.26949 -14.66918 -14.54070 -14.06642 -13.60886 -13.42775 -13.09571 -13.01113 -12.83950 -12.56096 -12.26575 -12.11863 -12.04186 -12.03511 -11.64850 -11.45816 -10.69634 -10.20297 -9.56106 -9.48371 -8.59534 -6.06028 -0.35545 0.57047 1.07046 1.35109 1.39849 1.53931 1.58789 2.24260 2.33031 3.06816 3.17159 3.66978 4.03248 4.25792 4.26996 4.41324 4.54298 4.71405 4.79767 4.88417 4.98727 5.12956 5.14791 5.27519 5.33159 5.38480 5.40196 5.53015 5.86849 6.41216 6.95188 7.32995 7.88330 8.57995 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.006076 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.888622 B = 4607.057087 C = 5132.188051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 C -0.149 4.149 4 C -0.189 4.189 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.272 4.272 8 C 0.493 3.507 9 O -0.633 6.633 10 N -0.553 5.553 11 C -0.341 4.341 12 H 0.087 0.913 13 C -0.010 4.010 14 N -0.911 5.911 15 Si 1.004 2.996 16 H -0.267 1.267 17 H -0.265 1.265 18 H -0.270 1.270 19 S 0.196 5.804 20 H 0.085 0.915 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.110 0.890 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.172 0.828 28 H 0.141 0.859 29 H 0.395 0.605 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 3.560 -15.559 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.043 4.043 3 C -0.207 4.207 4 C -0.309 4.309 5 C -0.180 4.180 6 C -0.113 4.113 7 C -0.392 4.392 8 C 0.282 3.718 9 O -0.523 6.523 10 N -0.187 5.187 11 C -0.470 4.470 12 H 0.105 0.895 13 C -0.211 4.211 14 N -0.550 5.550 15 Si 0.826 3.174 16 H -0.192 1.192 17 H -0.189 1.189 18 H -0.195 1.195 19 S 0.464 5.536 20 H 0.104 0.896 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.128 0.872 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.190 0.810 28 H 0.159 0.841 29 H 0.229 0.771 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.000 4.300 -14.542 15.459 hybrid contribution 0.793 -1.116 0.422 1.433 sum -2.207 3.184 -14.120 14.642 Atomic orbital electron populations 1.21960 0.93367 1.02478 1.02867 1.19885 0.96321 0.95840 0.92261 1.21958 1.01489 0.94363 1.02862 1.24687 1.04636 1.01651 0.99937 1.20087 1.01962 0.97610 0.98360 1.20855 0.99377 1.00009 0.91078 1.24702 1.12153 1.05541 0.96833 1.17262 0.84661 0.85117 0.84736 1.90583 1.46477 1.33016 1.82221 1.41863 1.44739 1.26095 1.06012 1.19833 1.32148 1.13248 0.81782 0.89549 1.26270 0.94932 0.94610 1.05280 1.69668 1.32158 1.15762 1.37392 0.84779 0.78556 0.78775 0.75314 1.19162 1.18937 1.19468 1.83001 1.47678 1.25861 0.97110 0.89590 0.92440 0.93392 0.87203 0.92434 0.89595 0.93395 0.81031 0.84113 0.77057 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.08 71.98 0.65 -1.88 16 2 C -0.02 -0.42 3.25 -11.54 -0.04 -0.46 16 3 C -0.15 -2.53 9.08 71.98 0.65 -1.88 16 4 C -0.19 -5.01 4.95 24.69 0.12 -4.88 16 5 C -0.15 -4.16 9.95 21.09 0.21 -3.95 16 6 C -0.08 -2.91 10.02 21.74 0.22 -2.69 16 7 C -0.27 -11.77 6.45 24.07 0.16 -11.61 16 8 C 0.49 26.93 7.73 86.38 0.67 27.60 16 9 O -0.63 -38.79 16.41 -4.47 -0.07 -38.87 16 10 N -0.55 -31.03 5.27 -310.81 -1.64 -32.67 16 11 C -0.34 -20.14 9.68 84.09 0.81 -19.33 16 12 H 0.09 5.37 7.15 -2.91 -0.02 5.35 16 13 C -0.01 -0.51 5.50 84.94 0.47 -0.05 16 14 N -0.91 -49.61 13.05 21.68 0.28 -49.32 16 15 Si 1.00 42.81 29.55 68.60 2.03 44.83 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 S 0.20 6.63 21.36 -56.49 -1.21 5.43 16 20 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.05 0.93 7.90 -2.38 -0.02 0.91 16 23 H 0.11 1.55 8.07 -2.38 -0.02 1.53 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.93 7.90 -2.39 -0.02 0.91 16 27 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 29 H 0.39 21.08 7.00 -92.71 -0.65 20.43 16 30 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -69.26 277.67 3.81 -65.45 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.50 Total: 24.28 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 3.92 Total: -19.13 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.36 Total: -81.99 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.07 Total: -38.87 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.21 Total: 5.43 kcal Total: -69.26 3.81 -65.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336014678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.450 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds